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PI0017172 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017172
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:789599..789901
RNA-Seq ExpressionPI0017172
SyntenyPI0017172
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025494.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.8e-3981Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3981Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3981Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

KAA0054148.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-3981Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-3981Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

TrEMBL top hitse value%identityAlignment
A0A5A7TXW1 Retrotransposon protein8.6e-4081Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

A0A5A7U476 Retrotransposon protein8.6e-4081Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

A0A5A7UGH9 Retrotransposon protein5.0e-4081Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

A0A5A7VL29 Retrotransposon protein5.0e-4081Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

A0A5D3BDX0 Retrotransposon protein8.6e-4081Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD
        MKHSSARNVIERAFG+LKG+WAILRG+SYYPVEVQ RTILAC LLHNLINREMTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD LAE MF +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13770.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).7.5e-0429.55Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTIL-----ACALLHNLINREMTNADIP--DEVDEGDSTYATTGGEDIHYIE
        MK  + R  +ERAFG+L+ ++AI+ G    P  +  +T+L     +C ++HN+I  +  + D P  + V+        TG +D  + E
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTIL-----ACALLHNLINREMTNADIP--DEVDEGDSTYATTGGEDIHYIE

AT5G12010.1 unknown protein9.8e-0438.3Show/hide
Query:  KHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNL
        K S  + V + AFG LKG+WA L+ R+   ++     + AC +LHN+
Subjt:  KHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNL

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.2e-0932.74Show/hide
Query:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTN--ADIPDEV-DEGDSTYATTGGEDIHYIETSNA----------WS
        ++H S RNVIER FG+ K ++AI +    +  + Q   +L CA LHN + +E  +  AD PDEV +EGD         + + I+               +
Subjt:  MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTN--ADIPDEV-DEGDSTYATTGGEDIHYIETSNA----------WS

Query:  QWRDELAERMFCD
         WR  +AE M+ D
Subjt:  QWRDELAERMFCD

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)7.5e-0433.33Show/hide
Query:  KHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINRE
        +H      I R FG LK ++ IL     YP++ Q + ++A   LHN +  E
Subjt:  KHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACATTCTTCCGCACGGAACGTCATCGAAAGAGCGTTCGGCTTGTTGAAGGGTCAATGGGCAATCCTCCGAGGAAGGTCATACTATCCTGTCGAAGTGCAAACTCG
CACGATACTCGCATGTGCCTTACTGCACAATCTCATAAATCGAGAGATGACGAACGCTGACATACCGGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGTG
GGGAGGACATACACTATATAGAGACGTCCAACGCATGGAGTCAATGGAGGGATGAGCTTGCAGAAAGAATGTTTTGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACATTCTTCCGCACGGAACGTCATCGAAAGAGCGTTCGGCTTGTTGAAGGGTCAATGGGCAATCCTCCGAGGAAGGTCATACTATCCTGTCGAAGTGCAAACTCG
CACGATACTCGCATGTGCCTTACTGCACAATCTCATAAATCGAGAGATGACGAACGCTGACATACCGGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGTG
GGGAGGACATACACTATATAGAGACGTCCAACGCATGGAGTCAATGGAGGGATGAGCTTGCAGAAAGAATGTTTTGTGATTGA
Protein sequenceShow/hide protein sequence
MKHSSARNVIERAFGLLKGQWAILRGRSYYPVEVQTRTILACALLHNLINREMTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAERMFCD