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PI0017202 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017202
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr04:25489683..25490138
RNA-Seq ExpressionPI0017202
SyntenyPI0017202
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033845.1 uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa]5.2e-5169.72Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS
        MDPIKYI+EK SL  RIAKWQVLL E+DI+Y+TRKA+KGS I +CLA  P++DYEPMK +F +ED+M V +T  +T  WTM FDGATNEVGH VGAIL S
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS

Query:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYE
         DGK YPLT KLYFDCT+NM EYEACSMG+ MAY+MKIK  +
Subjt:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYE

KAA0049671.1 uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa]1.0e-5986.72Show/hide
Query:  RRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKLYFDC
        RRIAKWQVLLSEFDIVYITRKAIKGSVIA+CLA+LPI+DYEPMKFDF +EDIMA++NTSPNTWTMMFDGATNE+GH VG ILMSPDGKWYPLTAKLYFDC
Subjt:  RRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKLYFDC

Query:  TNNMVEYEACSMGMHMAYEMKIKSYESL
        TNNM EYEACSMG+ MAYEMKIK    L
Subjt:  TNNMVEYEACSMGMHMAYEMKIKSYESL

TYK05800.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.4e-5082.91Show/hide
Query:  EFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKLYFDCTNNMVEYEACS
        +FDIVYITRKAIKGSVIANCLA+LPI+DYE MKFDF +EDIMA+VNTS NTWTM FDGATNE+GH VGAILMS DGKWYPLTAKLYFDCTNNM EYEACS
Subjt:  EFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKLYFDCTNNMVEYEACS

Query:  MGMHMAYEMKIKSYESL
        MG+ MAYEMK+K+   L
Subjt:  MGMHMAYEMKIKSYESL

XP_008447313.1 PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]9.8e-5876.76Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPD
        MDPIKYI+EKPSLS +IAKW VLL EFDIVYITRKAIKGSVI +CL +LPI+DYEPMKFDFL+EDIM +VNTS +TWTMMFD ATN+VGH +G  LMSPD
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPD

Query:  GKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESL
         K YP T KLYFDCTNNMVEY+ACSMG+ +AYEMKIK+   L
Subjt:  GKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESL

XP_016899404.1 PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo]2.5e-5370.34Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS
        MDPIKYI+EKPSLS RIAKWQVL SE+DI+Y+TR  +KGS I +CLA LP++DYE MKF+FL+ED+M V +T  +T  WTM FDGATNEVGH VGAIL  
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS

Query:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESLE
        PDGK YPLTAKLYFDCTNNM EYE CSMG+ MAY++KIK  +  E
Subjt:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESLE

TrEMBL top hitse value%identityAlignment
A0A1S3BH42 uncharacterized protein LOC1034897844.7e-5876.76Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPD
        MDPIKYI+EKPSLS +IAKW VLL EFDIVYITRKAIKGSVI +CL +LPI+DYEPMKFDFL+EDIM +VNTS +TWTMMFD ATN+VGH +G  LMSPD
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPD

Query:  GKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESL
         K YP T KLYFDCTNNMVEY+ACSMG+ +AYEMKIK+   L
Subjt:  GKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESL

A0A1S4DTT9 uncharacterized protein LOC1079905051.2e-5370.34Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS
        MDPIKYI+EKPSLS RIAKWQVL SE+DI+Y+TR  +KGS I +CLA LP++DYE MKF+FL+ED+M V +T  +T  WTM FDGATNEVGH VGAIL  
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS

Query:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESLE
        PDGK YPLTAKLYFDCTNNM EYE CSMG+ MAY++KIK  +  E
Subjt:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESLE

A0A5A7U7X5 Ribonuclease H5.0e-6086.72Show/hide
Query:  RRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKLYFDC
        RRIAKWQVLLSEFDIVYITRKAIKGSVIA+CLA+LPI+DYEPMKFDF +EDIMA++NTSPNTWTMMFDGATNE+GH VG ILMSPDGKWYPLTAKLYFDC
Subjt:  RRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKLYFDC

Query:  TNNMVEYEACSMGMHMAYEMKIKSYESL
        TNNM EYEACSMG+ MAYEMKIK    L
Subjt:  TNNMVEYEACSMGMHMAYEMKIKSYESL

A0A5A7UKV4 Retrovirus-related Pol polyprotein from transposon 17.61.2e-5370.34Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS
        MDPIKYI+EKPSLS RIAKWQVL SE+DI+Y+TR  +KGS I +CLA LP++DYE MKF+FL+ED+M V +T  +T  WTM FDGATNEVGH VGAIL  
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS

Query:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESLE
        PDGK YPLTAKLYFDCTNNM EYE CSMG+ MAY++KIK  +  E
Subjt:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYESLE

A0A5D3BPI8 RNase H domain-containing protein2.5e-5169.72Show/hide
Query:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS
        MDPIKYI+EK SL  RIAKWQVLL E+DI+Y+TRKA+KGS I +CLA  P++DYEPMK +F +ED+M V +T  +T  WTM FDGATNEVGH VGAIL S
Subjt:  MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNT--WTMMFDGATNEVGHSVGAILMS

Query:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYE
         DGK YPLT KLYFDCT+NM EYEACSMG+ MAY+MKIK  +
Subjt:  PDGKWYPLTAKLYFDCTNNMVEYEACSMGMHMAYEMKIKSYE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTATAAAATACATTTATGAAAAACCATCCTTATCGAGAAGAATAGCCAAATGGCAGGTGTTGTTATCAGAGTTTGATATTGTTTACATTACTAGAAAGGCCAT
AAAGGGAAGTGTGATTGCTAATTGCCTAGCTAAATTACCAATTCAAGACTATGAGCCCATGAAGTTCGACTTTCTGAATGAAGATATTATGGCGGTGGTGAATACCTCAC
CAAATACATGGACAATGATGTTTGATGGAGCCACAAATGAAGTAGGACACAGTGTGGGAGCTATTTTGATGTCCCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTA
TATTTCGATTGTACTAACAATATGGTCGAGTATGAAGCATGTAGTATGGGAATGCATATGGCCTATGAGATGAAAATAAAAAGTTACGAGTCCTTAGAGACTCTCTGTTG
GTTGTACATTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTATAAAATACATTTATGAAAAACCATCCTTATCGAGAAGAATAGCCAAATGGCAGGTGTTGTTATCAGAGTTTGATATTGTTTACATTACTAGAAAGGCCAT
AAAGGGAAGTGTGATTGCTAATTGCCTAGCTAAATTACCAATTCAAGACTATGAGCCCATGAAGTTCGACTTTCTGAATGAAGATATTATGGCGGTGGTGAATACCTCAC
CAAATACATGGACAATGATGTTTGATGGAGCCACAAATGAAGTAGGACACAGTGTGGGAGCTATTTTGATGTCCCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTA
TATTTCGATTGTACTAACAATATGGTCGAGTATGAAGCATGTAGTATGGGAATGCATATGGCCTATGAGATGAAAATAAAAAGTTACGAGTCCTTAGAGACTCTCTGTTG
GTTGTACATTAGCTGA
Protein sequenceShow/hide protein sequence
MDPIKYIYEKPSLSRRIAKWQVLLSEFDIVYITRKAIKGSVIANCLAKLPIQDYEPMKFDFLNEDIMAVVNTSPNTWTMMFDGATNEVGHSVGAILMSPDGKWYPLTAKL
YFDCTNNMVEYEACSMGMHMAYEMKIKSYESLETLCWLYIS