CuGenDBv2

Gene ID	PI0017212
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr08:22356921..22358015
RNA-Seq Expression	PI0017212
Synteny	PI0017212
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031721.1 reverse transcriptase [Cucumis melo var. makuwa]

1.8e-42

69.4

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Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+RS Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + N+V+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-42

69.4

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Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-42

69.4

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Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-42

69.4

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Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-42

69.4

Show/hide

Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQA2 Reverse transcriptase

8.8e-43

69.4

Show/hide

Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+RS Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + N+V+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

A0A5A7UXR6 Reverse transcriptase

1.1e-42

69.4

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Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

A0A5D3BRZ6 Reverse transcriptase

1.1e-42

69.12

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Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADRGG
        QD  D + NVV+R  I L+++ ED+DVE ILA+R G
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADRGG

A0A5D3C4R1 Reverse transcriptase

1.1e-42

69.4

Show/hide

Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

A0A5D3DBE0 Reverse transcriptase

1.1e-42

69.4

Show/hide

Query:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH
        +W++T D+ RAYLEK S+RMKK A KKRRPLEF+A DQVLIK+R  Q  FRGR DQ LVRKY GPVEVLKKVG  SYRVALPTWMK++P+IHVSNLKPYH
Subjt:  KWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVRKYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYH

Query:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR
        QD  D + NVV+R  I L+++ ED+DVE ILA+R
Subjt:  QDPGDTRCNVVSRRNIGLNKREEDQDVEAILADR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTTTGGTCCTACAGCTGAGGAAGGACCTCGCTCGTGATGAACCGACTGTCATCGCCACTCCGCTTAAACCGCTGGGGATTCAAGAAAAAGTAGCCTCGAAAGACGT
TCAGCGTGCCGTAGAGAAATATAACGATAGGGGGCCTGATAAGTGGAAACGGACAGCGGACGTCATCCGAGCTTATTTAGAGAAGACCTCCGAGCGGATGAAGAAGCGAG
CAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGAGAGACCAAGTCCTCATCAAAATGCGATCAGGACAAGGCTGGTTTCGAGGACGTACGGACCAACACCTCGTTAGG
AAATACGGGGGACCTGTTGAAGTCCTCAAGAAGGTGGGAAAAGCATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAATAATTCACGTGAGTAACTTAAA
GCCCTACCACCAAGACCCCGGTGACACACGATGCAACGTTGTCAGCCGGCGAAACATCGGTCTGAACAAAAGGGAAGAAGACCAAGATGTTGAAGCGATCCTTGCCGACC
GGGGCGGTGTTTGCCTGTGGCCGCATGTTCGAACACCTTCACCCCACCTTGAGTTATGTTTTTCCTTTAGTTTCCATGTCACTTTGCTTTTACTTTCATTGTCGCTTTAT
GCTTTCATTTACTTTCCGTGTCGCATTGCTTTTACCTTCTATGTCGCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

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MILVLQLRKDLARDEPTVIATPLKPLGIQEKVASKDVQRAVEKYNDRGPDKWKRTADVIRAYLEKTSERMKKRAGKKRRPLEFQARDQVLIKMRSGQGWFRGRTDQHLVR
KYGGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRRNIGLNKREEDQDVEAILADRGGVCLWPHVRTPSPHLELCFSFSFHVTLLLLSLSLY
AFIYFPCRIAFTFYVA

PI0017212 (gene) of Melon (PI 482460) v1 genome