; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0017237 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017237
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionBED-type domain-containing protein
Genome locationchr07:6090751..6091032
RNA-Seq ExpressionPI0017237
SyntenyPI0017237
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041802.1 hypothetical protein E6C27_scaffold67G001750 [Cucumis melo var. makuwa]2.1e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

KAA0066645.1 uncharacterized protein E6C27_scaffold979G00720 [Cucumis melo var. makuwa]2.1e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

KAA0068068.1 hypothetical protein E6C27_scaffold238G00160 [Cucumis melo var. makuwa]2.1e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

TYK26052.1 hypothetical protein E5676_scaffold1185G00050 [Cucumis melo var. makuwa]2.1e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

TYK28304.1 hypothetical protein E5676_scaffold600G001270 [Cucumis melo var. makuwa]2.1e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7TY62 BED-type domain-containing protein1.0e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

A0A5A7U370 Uncharacterized protein1.0e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

A0A5A7VJR4 BED-type domain-containing protein1.0e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

A0A5A7VLM8 Uncharacterized protein1.0e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

A0A5D3DXN3 BED-type domain-containing protein1.0e-3991.4Show/hide
Query:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MEISNFIYVRPGLLNMM+  TNQKELVRPAKTRFAT CI LSSIH QKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI+F+LKV
Subjt:  MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G36095.1 DNA binding1.6e-0838.1Show/hide
Query:  SNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSI---HRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFW
        +++IY    L+NMM+ +  +    + AK    T C +  +I   H+Q+ NLR   TS EW DSKW KE   R V + I+  SFW
Subjt:  SNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSI---HRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFW

AT4G15020.1 hAT transposon superfamily8.8e-0732.94Show/hide
Query:  ISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI
        I+ F+Y   G+LN+M   T+  +++ PA +  AT    L  I   K+NL+ M TS EW +  +S+E  G  V+  +   +FW  +
Subjt:  ISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI

AT4G15020.2 hAT transposon superfamily8.8e-0732.94Show/hide
Query:  ISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI
        I+ F+Y   G+LN+M   T+  +++ PA +  AT    L  I   K+NL+ M TS EW +  +S+E  G  V+  +   +FW  +
Subjt:  ISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTI

AT5G33406.1 hAT dimerisation domain-containing protein / transposase-related3.7e-1346.15Show/hide
Query:  MMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV
        MM+  T  + L RPA TR AT+ I L+  HR K+NLRKM  SDEW  SKW+KE  G ++       SFW  ++ +LK+
Subjt:  MMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTAGCAATTTCATATATGTTCGTCCTGGATTGTTAAACATGATGCAATGTGTTACTAATCAAAAGGAGTTGGTTAGACCAGCTAAGACTCGCTTTGCTACTAC
TTGCATTATATTATCAAGTATACATCGTCAAAAGAACAACTTGAGGAAGATGTTTACTTCAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGTAGGCGAG
TAGTTCAGACTATTTTGTTGGCTAGTTTTTGGACTACAATTATTTTTTCTCTTAAAGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTAGCAATTTCATATATGTTCGTCCTGGATTGTTAAACATGATGCAATGTGTTACTAATCAAAAGGAGTTGGTTAGACCAGCTAAGACTCGCTTTGCTACTAC
TTGCATTATATTATCAAGTATACATCGTCAAAAGAACAACTTGAGGAAGATGTTTACTTCAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGTAGGCGAG
TAGTTCAGACTATTTTGTTGGCTAGTTTTTGGACTACAATTATTTTTTCTCTTAAAGTATAG
Protein sequenceShow/hide protein sequence
MEISNFIYVRPGLLNMMQCVTNQKELVRPAKTRFATTCIILSSIHRQKNNLRKMFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIIFSLKV