CuGenDBv2

Gene ID	PI0017256
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	30S ribosomal protein S13, chloroplastic-like
Genome location	chr09:13847494..13848206
RNA-Seq Expression	PI0017256
Synteny	PI0017256
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001892 - Ribosomal protein S13 IPR010979 - Ribosomal protein S13-like, H2TH IPR027437 - 30s ribosomal protein S13, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578996.1 Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-25

56.15

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL +V N LLHRF SLS+                             +R  QVLA LHLENKLAKDLTKRE++VLADEI+ YMV H+L+KCV++
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRH +GLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

KAG7016519.1 30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-25

56.15

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL +V N LLHRF SLS+                             +R  QVLA LHLENKLAKDLTKRE++VLADEI+ YMV H+L+KCV++
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRH +GLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

XP_004140326.1 small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus]

3.6e-27

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL IV NALL RFESLS+                              R NQVLA LHLENKL+KDLTK+EL+ LADEI+ Y V H+LDKCVQR
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRHEQGLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

XP_022939154.1 30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]

3.4e-25

56.15

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL +V N LLHRF SLS+                             +R  QVLA LHLENKLAKDLTKRE++VLADEI+ YMV H+L+KCV++
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRH +GLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

XP_023550656.1 30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]

2.6e-25

56.92

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL IV N LLHRF SLS+                             +R  QVLA LHLENKLAKDLTKRE++VLADEI+ YMV H+L+KCV++
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRH +GLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMX9 Uncharacterized protein

1.8e-27

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL IV NALL RFESLS+                              R NQVLA LHLENKL+KDLTK+EL+ LADEI+ Y V H+LDKCVQR
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRHEQGLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

A0A6J1CKC9 30S ribosomal protein S13, chloroplastic-like

1.0e-22

53.91

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Query:  MFEVRCSLRIVFNALLHRFESLSV---------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNI
        MF VR SL IV NA L R +S+                             +R NQVLA LHL NKLAKDLTKREL++L DEI+ YMV H+L+ CV+++I
Subjt:  MFEVRCSLRIVFNALLHRFESLSV---------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNI

Query:  VRLQGIQYHRRIRHEQGLPCRGQRTKTN
         RLQ IQ HR IRH QGLPCRGQRTKTN
Subjt:  VRLQGIQYHRRIRHEQGLPCRGQRTKTN

A0A6J1FGA3 30S ribosomal protein S13, chloroplastic-like

1.6e-25

56.15

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL +V N LLHRF SLS+                             +R  QVLA LHLENKLAKDLTKRE++VLADEI+ YMV H+L+KCV++
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRH +GLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

A0A6J1JVL8 small ribosomal subunit protein S13, mitochondrial-like

2.8e-25

56.15

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Query:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR
        MF VR SL +V N LLHRF SLS+                             +R  QVLA LHLENKLAKDLTKRE++VLADEI+ YMV H+L KCV++
Subjt:  MFEVRCSLRIVFNALLHRFESLSV-----------------------------TRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQR

Query:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        +I RLQ IQ HR IRH +GLPCRGQRTKTN
Subjt:  NIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

A0A7N2KWF3 Uncharacterized protein

3.8e-14

51.16

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Query:  LHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        L     +  +R  Q+L+ L +ENKLA++LT REL  L +E+ NYM  H+L+  V ++I RL  IQ +R IRH QGLPCRGQRT TN
Subjt:  LHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

SwissProt top hits

e value

%identity

Alignment

A4G9R6 30S ribosomal protein S13

5.1e-08

46.97

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Query:  LENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        L  K  KDL   EL  L DEI  ++V+  L + +  NI RL  +  +R +RH +GLPCRGQRT+TN
Subjt:  LENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

P42732 30S ribosomal protein S13, chloroplastic

3.7e-14

42.42

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Query:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        E+  + RI ++  L     +  TR  Q+L  L +ENK+ KD+ + EL++L DE++ YM++  L +     I RL+ IQ +R +RH QGLPCRGQRTK N
Subjt:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

P82163 30S ribosomal protein S13, chloroplastic

9.0e-13

47.67

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Query:  LHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        L     +  +R  Q+L  L LENKL K+L++ ELL + DE+T YM++  L +     I RL+ IQ +R +RH QGLPCRGQRTK N
Subjt:  LHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial

4.8e-14

41.41

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Query:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        E+  + R+V+   L     +  ++   ++A L +ENK  KDL+KREL  + + ++ Y++ + L KCV+R++ RL GIQ +R IRH   LPCRGQRT TN
Subjt:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

Q9CA19 Small ribosomal subunit protein S13, mitochondrial

1.2e-09

44.74

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Query:  RENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        + +QVL +L + NKLA+DLT +EL+ L +E+  +    +L + V   I RL  +  +R  RH  GLPCRGQRT TN
Subjt:  RENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

Arabidopsis top hits

e value

%identity

Alignment

AT1G77750.1 Ribosomal protein S13/S18 family

8.7e-11

44.74

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Query:  RENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        + +QVL +L + NKLA+DLT +EL+ L +E+  +    +L + V   I RL  +  +R  RH  GLPCRGQRT TN
Subjt:  RENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

AT5G14320.1 Ribosomal protein S13/S18 family

2.6e-15

42.42

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Query:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN
        E+  + RI ++  L     +  TR  Q+L  L +ENK+ KD+ + EL++L DE++ YM++  L +     I RL+ IQ +R +RH QGLPCRGQRTK N
Subjt:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTN

AT5G14320.2 Ribosomal protein S13/S18 family

9.3e-05

34.92

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Query:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKL
        E+  + RI ++  L     +  TR  Q+L  L +ENK+ KD+ + EL++L DE++ YM++  L
Subjt:  EVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKL

Sequences

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CDS sequence

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ATGTTCGAAGTTCGTTGTTCCTTGAGGATTGTCTTTAATGCTCTTCTTCATCGTTTTGAATCATTATCTGTGACGAGAGAAAACCAAGTTCTTGCCTACCTTCACTTGGA
AAACAAGCTTGCCAAAGATTTGACTAAAAGAGAGCTCCTTGTTCTTGCAGACGAAATTACCAACTACATGGTTAAACATAAGTTGGATAAATGTGTTCAAAGGAACATTG
TTAGGTTGCAGGGCATTCAGTACCATAGAAGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATATGCTAGGACTATGA

mRNA sequence

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Protein sequence

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MFEVRCSLRIVFNALLHRFESLSVTRENQVLAYLHLENKLAKDLTKRELLVLADEITNYMVKHKLDKCVQRNIVRLQGIQYHRRIRHEQGLPCRGQRTKTNMLGL

PI0017256 (gene) of Melon (PI 482460) v1 genome