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PI0017278 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017278
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:20024314..20024925
RNA-Seq ExpressionPI0017278
SyntenyPI0017278
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-6665.2Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPN+KCP+++E+ N++RKYDPH NTYN+ WRDNPNLRW NDNQ+  QA S+S+NQGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT AISK++GKGKLS   ++ANVS +SLRS K L+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK  K  + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.1e-6765.69Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFV G  +KV KCGVC LVGH N+KCP+++E+ N++R+YDPH NTYN+ WRDNPNLRW NDNQ+   A S+S+ QGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT   SK++GKGKLS  P HANVSVISLRS K L+TP+S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-6767.32Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNT
        MLNM TTLLTSFVQG  +KV KCGVC LVGH NEKCP+++E+ N++R+YDPHSNTYN+ WRDNPNLRW NDNQ+  QA S+S+NQGTNLED+ KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNT

Query:  ISFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPK
        +SFQ EMKQQ++ LT AISK++GKGKL    DHANVS ISLRS K L+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK
Subjt:  ISFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPK

Query:  APFPS
         PFPS
Subjt:  APFPS

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.1e-6765.69Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFV G  +KV KCGVC LVGH N+KCP+++E+ N++R+YDPH NTYN+ WRDNPNLRW NDNQ+   A S+S+ QGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT   SK++GKGKLS  P HANVSVISLRS K L+TP+S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

XP_008465471.1 PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]9.1e-6765.69Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFV G  +KV KCGVC LVGH N+KCP+++E+ N++R+YDPH NTYN+ WRDNPNLRW NDNQ+   A S+S+ QGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT   SK++GKGKLS  P HANVSVISLRS K L+TP+S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

TrEMBL top hitse value%identityAlignment
A0A1S3CQF6 uncharacterized protein LOC1035030784.4e-6765.69Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFV G  +KV KCGVC LVGH N+KCP+++E+ N++R+YDPH NTYN+ WRDNPNLRW NDNQ+   A S+S+ QGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT   SK++GKGKLS  P HANVSVISLRS K L+TP+S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

A0A5A7V668 Retrotransposon gag protein4.4e-6765.69Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFV G  +KV KCGVC LVGH N+KCP+++E+ N++R+YDPH NTYN+ WRDNPNLRW NDNQ+   A S+S+ QGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT   SK++GKGKLS  P HANVSVISLRS K L+TP+S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

A0A5A7VQ60 Retrotransposon gag protein1.2e-6767.32Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNT
        MLNM TTLLTSFVQG  +KV KCGVC LVGH NEKCP+++E+ N++R+YDPHSNTYN+ WRDNPNLRW NDNQ+  QA S+S+NQGTNLED+ KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNT

Query:  ISFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPK
        +SFQ EMKQQ++ LT AISK++GKGKL    DHANVS ISLRS K L+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK
Subjt:  ISFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPK

Query:  APFPS
         PFPS
Subjt:  APFPS

A0A5D3CQR9 Retrotransposon gag protein4.4e-6765.69Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFV G  +KV KCGVC LVGH N+KCP+++E+ N++R+YDPH NTYN+ WRDNPNLRW NDNQ+   A S+S+ QGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT   SK++GKGKLS  P HANVSVISLRS K L+TP+S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

A0A5D3CRR8 Retrotransposon gag protein5.7e-6765.2Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPN+KCP+++E+ N++RKYDPH NTYN+ WRDNPNLRW NDNQ+  QA S+S+NQGTNLED+ KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTI

Query:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA
        SFQ EMKQQ++ LT AISK++GKGKLS   ++ANVS +SLRS K L+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK  K  + D++PY+PK 
Subjt:  SFQNEMKQQISHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKG-KSHILDYSPYVPKA

Query:  PFPS
        PFPS
Subjt:  PFPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTATGCAGTCTAGTCGGACATCCTAATGAGAAATGCCCTGA
CTTAGTGGAAGAGGCAAATGTCATTAGAAAGTACGATCCTCATAGCAACACTTACAATGCCAGTTGGAGAGACAACCCTAACCTAAGATGGGAAAACGACAACCAAAGAC
CCTTGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATCTGGAAGATTTAGCTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAACAGATA
TCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTTCGACTCTGCCTGATCATGCCAACGTAAGTGTCATCTCACTTAGAAGCAGTAAGACTCTGGA
AACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGTTCTTTACCATCTTCTTCAAAAG
GTAAATCTCATATTCTTGATTATTCTCCTTATGTCCCTAAAGCTCCTTTTCCTTCCGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTATGCAGTCTAGTCGGACATCCTAATGAGAAATGCCCTGA
CTTAGTGGAAGAGGCAAATGTCATTAGAAAGTACGATCCTCATAGCAACACTTACAATGCCAGTTGGAGAGACAACCCTAACCTAAGATGGGAAAACGACAACCAAAGAC
CCTTGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATCTGGAAGATTTAGCTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAACAGATA
TCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTTCGACTCTGCCTGATCATGCCAACGTAAGTGTCATCTCACTTAGAAGCAGTAAGACTCTGGA
AACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAGTTAGAAACTAGTTCTTTACCATCTTCTTCAAAAG
GTAAATCTCATATTCTTGATTATTCTCCTTATGTCCCTAAAGCTCCTTTTCCTTCCGGTTAG
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCSLVGHPNEKCPDLVEEANVIRKYDPHSNTYNASWRDNPNLRWENDNQRPLQATSSSNNQGTNLEDLAKALATNTISFQNEMKQQI
SHLTNAISKLEGKGKLSTLPDHANVSVISLRSSKTLETPSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGKSHILDYSPYVPKAPFPSG