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PI0017288 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017288
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:18225329..18225938
RNA-Seq ExpressionPI0017288
SyntenyPI0017288
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.0e-5184.87Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.4e-5083.19Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        +L  E G+SVNEYL T QPIWTQLDQAKISPDHIRLIKVLMGLR EYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +LPSDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
        +FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.0e-5184.87Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]3.4e-5084.03Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQL+QAKISPDHIRLIKVLMGLRPEYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]1.8e-5184.03Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQLDQAKI+P+HIRLIKVLMGLRPEYES+ AALLHRNPLPS DA +QEILFEE RLGI+ +LPSDVALATTH RS NES
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882001.7e-5084.03Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQL+QAKISPDHIRLIKVLMGLRPEYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-5084.03Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYE + AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

A0A5A7TXR0 Putative mitochondrial protein1.7e-5083.19Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        +L  E G+SVNEYL T QPIWTQLDQAKISPDHIRLIKVLMGLR EYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +LPSDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
        +FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-5184.87Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-5184.87Show/hide
Query:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES
        SL  E G+SVNEYL TLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYES+ AALLHRNPLPS DA VQEILFEEKRLGI+ +L SDVALATTH R  NE+
Subjt:  SLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEKRLGIIFALPSDVALATTHPRSTNES

Query:  TFCKNCKLHGHKFANCPTI
         FCKNCKLHGHKFANCPTI
Subjt:  TFCKNCKLHGHKFANCPTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTCTGCCTCCTCTGACGTCACTATTCATGAGCCTACCACAAAAGATGCCAAGTACATTGAAAAACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACT
TGGTTGGGAGAGCGGGAAATCTGTGAATGAATACCTGACTACCCTTCAACCTATTTGGACTCAGTTAGATCAGGCAAAAATCAGCCCTGATCATATTCGTCTCATCAAAG
TCCTCATGGGACTCCGCCCAGAGTATGAATCTATTCATGCTGCTCTGTTACACCGCAACCCACTACCATCTTTCGACGCTACCGTCCAAGAGATTTTATTTGAGGAGAAA
CGTCTTGGCATCATCTTCGCTCTGCCCTCTGATGTTGCTTTAGCTACCACTCATCCTCGATCCACCAATGAGTCCACCTTCTGCAAAAACTGTAAACTTCATGGTCATAA
GTTTGCTAACTGTCCTACCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTCTGCCTCCTCTGACGTCACTATTCATGAGCCTACCACAAAAGATGCCAAGTACATTGAAAAACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCACT
TGGTTGGGAGAGCGGGAAATCTGTGAATGAATACCTGACTACCCTTCAACCTATTTGGACTCAGTTAGATCAGGCAAAAATCAGCCCTGATCATATTCGTCTCATCAAAG
TCCTCATGGGACTCCGCCCAGAGTATGAATCTATTCATGCTGCTCTGTTACACCGCAACCCACTACCATCTTTCGACGCTACCGTCCAAGAGATTTTATTTGAGGAGAAA
CGTCTTGGCATCATCTTCGCTCTGCCCTCTGATGTTGCTTTAGCTACCACTCATCCTCGATCCACCAATGAGTCCACCTTCTGCAAAAACTGTAAACTTCATGGTCATAA
GTTTGCTAACTGTCCTACCATTTAG
Protein sequenceShow/hide protein sequence
MSILPPLTSLFMSLPQKMPSTLKNLRTGIAKIIKSSLGWESGKSVNEYLTTLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESIHAALLHRNPLPSFDATVQEILFEEK
RLGIIFALPSDVALATTHPRSTNESTFCKNCKLHGHKFANCPTI