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PI0017317 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017317
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:14751728..14752642
RNA-Seq ExpressionPI0017317
SyntenyPI0017317
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]7.0e-4054.6Show/hide
Query:  RWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNR------RGVRGRSDEGMVKNIVVALQG
        R++ M+K CPH+ I EC+LME FYFGL+K T Q A+ VF GG+L+SSYNQIK  LDTMA N++EW ++ F +R      +G RGR ++G+  +I+VALQG
Subjt:  RWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNR------RGVRGRSDEGMVKNIVVALQG

Query:  QIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND
        Q+I MN L +SMA+ QVN   SS+Q V  ++++GCV   GC  PHNT+ACPLNTEIV +++ND
Subjt:  QIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]7.8e-3134.38Show/hide
Query:  MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHI-----------TRRTEIHPFSVNSEGRGEAMGECLGR
        + H+  RPIRSYA P+LY FNP I YP F ENA ++ K    +  N +   +    E+  E              RR ++  F        + + +    
Subjt:  MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHI-----------TRRTEIHPFSVNSEGRGEAMGECLGR

Query:  WQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNN
        ++ MVKAC H+GI++ +LME FYFGL+K T+Q AD++F+GGIL+SSYNQIKA LD+MA N+++                                     
Subjt:  WQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNN

Query:  LSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND
                       S  AV  ++++ C    GC GPHNTDACPLN EIV +++ D
Subjt:  LSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]7.0e-3255.64Show/hide
Query:  EAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVAL
        E M +   R++ +VKACP +GI EC+ MEVFYFGL+K T Q+ + +FVGG+L+SSYNQIKATLD+M+ N++EWD+  F +R   RGR+ EG+ K++VV L
Subjt:  EAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVAL

Query:  QGQIIAMNNLSKSMAISQVNAAGSSMQAVNLID
        QGQ+IAMNNL +SM +SQVNAA + + AV  ++
Subjt:  QGQIIAMNNLSKSMAISQVNAAGSSMQAVNLID

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]2.4e-3231.31Show/hide
Query:  DSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHITRRTEI----------------------------------
        D + PIR+YAAPNLY+F+P I+ P+  ENARF+IKPVM+QMI  + QF+S   ENP+ H+T   E+                                  
Subjt:  DSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHITRRTEI----------------------------------

Query:  -------------------HPFSVNSEGR----------GEAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIK
                            P ++N+  R           E +     R++ +VK CPH GI +C+LME+FY GLN++TQ +ADA  V   +  +Y + K
Subjt:  -------------------HPFSVNSEGR----------GEAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIK

Query:  ATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMV-KNIVVALQGQIIAMNNLSKSMAISQ-VNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEI
          LD ++ N ++W +D +  R   R R+D  +V  N +  L  Q+  + +L + MA++Q V++ GS+    N    +  +  +     H  + CP N + 
Subjt:  ATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMV-KNIVVALQGQIIAMNNLSKSMAISQ-VNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEI

Query:  VTFIRNDLYSNTY
        V  I+N+ Y+NTY
Subjt:  VTFIRNDLYSNTY

XP_038896595.1 uncharacterized protein LOC120084850 [Benincasa hispida]2.4e-3234.32Show/hide
Query:  IRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHITR------------------RTEIHPFSVNSEGRGEAMG---ECL
        +R+YAAPN YNF P I+ P   ENA F I+ +MLQMI   G+F     E+P+ H+T                   R  I P+++  E R  A       +
Subjt:  IRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHITR------------------RTEIHPFSVNSEGRGEAMG---ECL

Query:  GRW-----QGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNI--VVAL
          W     + +VK C H GI  C+LME  Y GL+++ Q +ADA    G++  +Y + K  LD ++RN +EW  + ++  RG   R  EG +  I  +  L
Subjt:  GRW-----QGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNI--VVAL

Query:  QGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRNDLYSNTY
          Q+  M  L ++MAI Q + + SS QA N +  +  V C+ C   H+ + CPLN + V  I N+ + N Y
Subjt:  QGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRNDLYSNTY

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein3.4e-3255.64Show/hide
Query:  EAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVAL
        E M +   R++ +VKACP +GI EC+ MEVFYFGL+K T Q+ + +FVGG+L+SSYNQIKATLD+M+ N++EWD+  F +R   RGR+ EG+ K++VV L
Subjt:  EAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVAL

Query:  QGQIIAMNNLSKSMAISQVNAAGSSMQAVNLID
        QGQ+IAMNNL +SM +SQVNAA + + AV  ++
Subjt:  QGQIIAMNNLSKSMAISQVNAAGSSMQAVNLID

A0A5A7V1F3 Retrotrans_gag domain-containing protein3.8e-3134.38Show/hide
Query:  MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHI-----------TRRTEIHPFSVNSEGRGEAMGECLGR
        + H+  RPIRSYA P+LY FNP I YP F ENA ++ K    +  N +   +    E+  E              RR ++  F        + + +    
Subjt:  MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHI-----------TRRTEIHPFSVNSEGRGEAMGECLGR

Query:  WQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNN
        ++ MVKAC H+GI++ +LME FYFGL+K T+Q AD++F+GGIL+SSYNQIKA LD+MA N+++                                     
Subjt:  WQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNN

Query:  LSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND
                       S  AV  ++++ C    GC GPHNTDACPLN EIV +++ D
Subjt:  LSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND

A0A5D3CC26 Uncharacterized protein3.4e-4054.6Show/hide
Query:  RWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNR------RGVRGRSDEGMVKNIVVALQG
        R++ M+K CPH+ I EC+LME FYFGL+K T Q A+ VF GG+L+SSYNQIK  LDTMA N++EW ++ F +R      +G RGR ++G+  +I+VALQG
Subjt:  RWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNR------RGVRGRSDEGMVKNIVVALQG

Query:  QIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND
        Q+I MN L +SMA+ QVN   SS+Q V  ++++GCV   GC  PHNT+ACPLNTEIV +++ND
Subjt:  QIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNTEIVTFIRND

A0A5D3CSC7 Uncharacterized protein1.7e-2855.93Show/hide
Query:  SSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACP
        SSYNQI  TLD++A NNEEWD+D FD+ RG RG+++EG+ +N++V  QGQ+ AMNNL + M   QVNAA SS Q+V  +D+   +GCM    PH  DACP
Subjt:  SSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACP

Query:  LNTEIVTFIRNDLYSNTY
        LN EIV ++++D YSNTY
Subjt:  LNTEIVTFIRNDLYSNTY

U5CUI2 Retrotrans_gag domain-containing protein1.2e-2428.66Show/hide
Query:  MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHI------------------TRRTEIHPFSVNSEGRG--
        +  D  R IR YAAP     NP I  P   +  +F++KPVM QM+  VGQF   P E+P+ H+                    R ++ PFS+    R   
Subjt:  MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHI------------------TRRTEIHPFSVNSEGRG--

Query:  -------------------------------------------EAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYN
                                                   E+  +   R++ +++ CPH+GI  CI ME FY GLN A++ + DA   G IL  SYN
Subjt:  -------------------------------------------EAMGECLGRWQGMVKACPHNGISECILMEVFYFGLNKATQQIADAVFVGGILKSSYN

Query:  QIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVK-NIVVALQGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNT
        +    L+T+A NN +W      N R    R   G+++ + + AL  Q+ +M N+ K+++I   NA      A    DD   V C+ C   H  + CP N 
Subjt:  QIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVK-NIVVALQGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGCMGCSGPHNTDACPLNT

Query:  EIVTFIRNDLYSNT
        E V ++ N   + T
Subjt:  EIVTFIRNDLYSNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCATGATTCAGACAGACCAATTAGGTCTTATGCCGCACCTAACCTTTATAACTTCAACCCTAGAATCACCTACCCTGTGTTCAGCGAGAACGCAAGATTCGATAT
CAAACCTGTCATGCTACAAATGATCAACAAAGTCGGACAGTTTGACAGTCATCCTAGGGAAAATCCATACGAGCATATCACCCGAAGAACTGAGATTCACCCTTTTTCCG
TTAACTCTGAGGGACGAGGCGAAGCTATGGGCGAATGCCTTGGAAGATGGCAAGGGATGGTGAAAGCATGCCCCCACAATGGCATTTCGGAATGCATATTGATGGAGGTG
TTCTACTTTGGTCTGAACAAGGCGACGCAGCAGATTGCTGATGCTGTATTTGTAGGCGGTATACTGAAAAGTTCATACAACCAGATCAAGGCAACGCTGGATACAATGGC
CAGAAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGTACGAGGAAGAAGTGATGAAGGAATGGTTAAAAACATCGTGGTGGCGTTACAAGGACAAA
TTATTGCAATGAACAATCTTTCAAAATCAATGGCAATATCGCAGGTTAATGCAGCCGGAAGCTCTATGCAGGCGGTGAATTTAATTGATGATTTGGGATGTGTGGGATGC
ATGGGATGCAGCGGTCCTCACAATACTGACGCATGCCCACTTAACACTGAAATTGTCACGTTCATAAGGAACGACCTTTACTCCAACACCTACAAGTTTGTTTTACCCCT
ATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCATGATTCAGACAGACCAATTAGGTCTTATGCCGCACCTAACCTTTATAACTTCAACCCTAGAATCACCTACCCTGTGTTCAGCGAGAACGCAAGATTCGATAT
CAAACCTGTCATGCTACAAATGATCAACAAAGTCGGACAGTTTGACAGTCATCCTAGGGAAAATCCATACGAGCATATCACCCGAAGAACTGAGATTCACCCTTTTTCCG
TTAACTCTGAGGGACGAGGCGAAGCTATGGGCGAATGCCTTGGAAGATGGCAAGGGATGGTGAAAGCATGCCCCCACAATGGCATTTCGGAATGCATATTGATGGAGGTG
TTCTACTTTGGTCTGAACAAGGCGACGCAGCAGATTGCTGATGCTGTATTTGTAGGCGGTATACTGAAAAGTTCATACAACCAGATCAAGGCAACGCTGGATACAATGGC
CAGAAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGTACGAGGAAGAAGTGATGAAGGAATGGTTAAAAACATCGTGGTGGCGTTACAAGGACAAA
TTATTGCAATGAACAATCTTTCAAAATCAATGGCAATATCGCAGGTTAATGCAGCCGGAAGCTCTATGCAGGCGGTGAATTTAATTGATGATTTGGGATGTGTGGGATGC
ATGGGATGCAGCGGTCCTCACAATACTGACGCATGCCCACTTAACACTGAAATTGTCACGTTCATAAGGAACGACCTTTACTCCAACACCTACAAGTTTGTTTTACCCCT
ATAA
Protein sequenceShow/hide protein sequence
MVHDSDRPIRSYAAPNLYNFNPRITYPVFSENARFDIKPVMLQMINKVGQFDSHPRENPYEHITRRTEIHPFSVNSEGRGEAMGECLGRWQGMVKACPHNGISECILMEV
FYFGLNKATQQIADAVFVGGILKSSYNQIKATLDTMARNNEEWDEDDFDNRRGVRGRSDEGMVKNIVVALQGQIIAMNNLSKSMAISQVNAAGSSMQAVNLIDDLGCVGC
MGCSGPHNTDACPLNTEIVTFIRNDLYSNTYKFVLPL