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PI0017333 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017333
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:11169425..11170980
RNA-Seq ExpressionPI0017333
SyntenyPI0017333
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]4.8e-5973.38Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKY+P  NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS
         EMKQQM+ LT  ISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EK V+
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-5874.17Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+Y+P SNTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++K L TNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEK
         EMKQQM+ LT  ISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EK
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-5974.83Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+Y+P SNTYN GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEK
         +MKQQM+ LT  ISK++GKGKLPAQPDHANVSAISLRSGKIL+TP+++EK
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-5973.2Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+Y+P  NTYN+GWRD PNLRWGND Q  +QA S+S+NQGTNLED++K L TNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVV
         EMKQQM+ LT  ISK++GKGKLPAQPDHANVSAISLRSGKIL+TP+++EK V
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVV

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.3e-5972.73Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+Y+P  NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS
         +MKQQM+ LT VISK++GKGKLPAQPDH NVSAISLRSGKIL+TP+++EK V+
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032916.1e-6072.73Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+Y+P  NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS
         +MKQQM+ LT VISK++GKGKLPAQPDH NVSAISLRSGKIL+TP+++EK V+
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS

A0A5A7VQ60 Retrotransposon gag protein1.5e-5873.2Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+Y+P SNTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+SFQ 
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQN

Query:  EMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS
        EMKQQM+ LT  ISK++GKGKLPAQ DHANVSAISLRSGKIL+TP+++EK V+
Subjt:  EMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS

A0A5D3CB46 Retrotransposon gag protein3.9e-5974.83Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+Y+P SNTYN GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEK
         +MKQQM+ LT  ISK++GKGKLPAQPDHANVSAISLRSGKIL+TP+++EK
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEK

A0A5D3CFE7 Retrotransposon gag protein3.0e-5973.2Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+Y+P  NTYN+GWRD PNLRWGND Q  +QA S+S+NQGTNLED++K L TNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVV
         EMKQQM+ LT  ISK++GKGKLPAQPDHANVSAISLRSGKIL+TP+++EK V
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVV

E5GBZ4 Retrotransposon gag protein2.3e-5973.38Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKY+P  NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++K LATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQ

Query:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS
         EMKQQM+ LT  ISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EK V+
Subjt:  NEMKQQMSHLTNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGAAAATGTCATTAGGAAGTACAATCCTGATAGCAATACTTATAATGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAACTCTTGCTACTAATACTATCTCCTTTCAGAATGAAATGAAACAACAAATGTCTCATCTA
ACAAATGTCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGAAACCCCTTC
AAGCGAAGAAAAGGTCGTTTCGGTCCAAACACAGTTGGCAAAGAGGTTGTCGGAGTGGCAAGGATTCGTCGGATGGTCTCACGTTACAGCAAAGTCATGCAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGAAAATGTCATTAGGAAGTACAATCCTGATAGCAATACTTATAATGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAACTCTTGCTACTAATACTATCTCCTTTCAGAATGAAATGAAACAACAAATGTCTCATCTA
ACAAATGTCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGAAACCCCTTC
AAGCGAAGAAAAGGTCGTTTCGGTCCAAACACAGTTGGCAAAGAGGTTGTCGGAGTGGCAAGGATTCGTCGGATGGTCTCACGTTACAGCAAAGTCATGCAAGGACTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYNPDSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKTLATNTISFQNEMKQQMSHL
TNVISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVVSVQTQLAKRLSEWQGFVGWSHVTAKSCKD