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PI0017348 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017348
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:9994667..10012988
RNA-Seq ExpressionPI0017348
SyntenyPI0017348
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060332.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4461.38Show/hide
Query:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV
        M+AE++P   +  TT IDCRIKT KR F AI +M GP CSGFGWNDE KCII EK+LFD+WV+SHP AK+LLNKPFP+YD+L Y+F +D A G   KTF 
Subjt:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV

Query:  DVGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        DVGSN P GY GF   DG++ E P +Y QG+DMS DD+  +RP R
Subjt:  DVGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]5.9e-4460.96Show/hide
Query:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV
        M+AE++P   + ATT IDCRIKT+KR FQAI +M+GP CSGFGWNDE KCIIAEK+LFD+WV+SHP AK LLNKPFP+YD+L Y+F +D ATG   +TF 
Subjt:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV

Query:  DVGSNVP-KGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        DVGSN P  GY  F   DG++ + P +Y QG+D+S DD+  +RP R
Subjt:  DVGSNVP-KGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

KAA0066570.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-4461.7Show/hide
Query:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD
        M+A ++P  NI A+TID RIK MKR F A+ +M+GPTCSGFGWNDE KCI+  K++FD WVKSHP AK LLNK FPHYD+  Y+F KD ATG   K+F D
Subjt:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD

Query:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTR
        VGSN P GY  F AD   D + P MY QGL+MSPDD++ TR
Subjt:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTR

TYK15304.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-4561.81Show/hide
Query:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD
        M+A ++P  NI A+TID RIK MKR F A+ +M+GPTCSGFGWNDE KCI+ EK++FD WVKSHP AK LLNK FPHYD+  Y+F KD ATG   K+F D
Subjt:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD

Query:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        VGSN P GY  F AD   D + P MY QGL+MSPDD++ TR  R
Subjt:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

XP_008466949.1 PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]5.9e-4460.28Show/hide
Query:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD
        M+A ++P  NI A+TID RIK MKR F A+ +M+GP CSGFGWNDE KCI+AEK++FD WVKSHPTAK LLNK F HYD+L Y+F KD ATG   ++F D
Subjt:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD

Query:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTR
        +GSN P GY  F+AD   D + P MY   L+MSPDD+++TR
Subjt:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTR

TrEMBL top hitse value%identityAlignment
A0A5A7T091 Retrotransposon protein2.8e-4460.27Show/hide
Query:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV
        M+AE++P   + ATT IDCRIKT+KR FQAI +M+GP CSGFGWNDE KCI+AEK+LFD+WV+SHP AK LLNKPFP+YD+L Y+F +D ATG   +TF 
Subjt:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV

Query:  DVGSNVP-KGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        DVGSN P  GY  F   DG++ + P +Y QG+D+S DD+  +RP R
Subjt:  DVGSNVP-KGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

A0A5A7TZA5 Retrotransposon protein2.8e-4458.33Show/hide
Query:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD
        M+A ++P  N+ A+TID RIK +KR F AI +M+GPTCSGFGWNDE KCI+AEK++FD WV+SHP AK LLNK FPHYD+L Y+F KD ATG   ++F D
Subjt:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD

Query:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        VGSN P GY  F+A+   D +   MY +GL+MSPD+++ TR  R
Subjt:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

A0A5A7UWV7 Retrotransposon protein9.7e-4561.38Show/hide
Query:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV
        M+AE++P   +  TT IDCRIKT KR F AI +M GP CSGFGWNDE KCII EK+LFD+WV+SHP AK+LLNKPFP+YD+L Y+F +D A G   KTF 
Subjt:  MIAERMPRHNIMATT-IDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFV

Query:  DVGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        DVGSN P GY GF   DG++ E P +Y QG+DMS DD+  +RP R
Subjt:  DVGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

A0A5A7VHC6 Retrotransposon protein7.5e-4561.7Show/hide
Query:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD
        M+A ++P  NI A+TID RIK MKR F A+ +M+GPTCSGFGWNDE KCI+  K++FD WVKSHP AK LLNK FPHYD+  Y+F KD ATG   K+F D
Subjt:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD

Query:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTR
        VGSN P GY  F AD   D + P MY QGL+MSPDD++ TR
Subjt:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTR

A0A5D3CWJ7 Retrotransposon protein1.5e-4561.81Show/hide
Query:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD
        M+A ++P  NI A+TID RIK MKR F A+ +M+GPTCSGFGWNDE KCI+ EK++FD WVKSHP AK LLNK FPHYD+  Y+F KD ATG   K+F D
Subjt:  MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVD

Query:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR
        VGSN P GY  F AD   D + P MY QGL+MSPDD++ TR  R
Subjt:  VGSNVPKGYGGFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein7.2e-0831.87Show/hide
Query:  RIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVDVGSNVPKGY
        R+K +K  +Q+   +K    SGFGW+ E K   A  +++  ++K+HP  K +  +   H++DL  IF    ATG+      D  S  P+ Y
Subjt:  RIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVDVGSNVPKGY

AT2G24960.1 unknown protein5.7e-0529.03Show/hide
Query:  GFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVDV
        GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC I+    A G ++ +  D+
Subjt:  GFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVDV

AT2G24960.2 unknown protein1.5e-0834.48Show/hide
Query:  SGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTK
        +GF W+     +IA+ D++++++++HP A+S   K  P Y +LC+IF K+ + G +T+
Subjt:  SGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTK

AT4G02210.1 unknown protein1.6e-0730.3Show/hide
Query:  RIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYI
        R K+++R F AI  +      GF W++E + + A+ +++  ++K+H  A+  + +P P+Y DLC +
Subjt:  RIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYI

AT4G02210.2 unknown protein1.6e-0730.3Show/hide
Query:  RIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYI
        R K+++R F AI  +      GF W++E + + A+ +++  ++K+H  A+  + +P P+Y DLC +
Subjt:  RIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCCGAGAGGATGCCGAGACATAACATAATGGCTACGACAATAGATTGTCGAATCAAAACAATGAAAAGAGCATTCCAAGCGATATTTAAAATGAAGGGCCCGAC
GTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTTGACAGTTGGGTGAAGAGTCATCCTACTGCCAAGAGCCTCCTAAACAAGC
CCTTTCCCCATTACGACGACCTGTGCTACATATTTAGGAAAGATTGTGCGACGGGAGCACACACGAAGACATTCGTCGATGTGGGGTCGAATGTACCTAAAGGGTATGGG
GGCTTTTCCGCTGACGATGGTCACGATATGGAGATCCCTATGATGTACATTCAGGGACTAGACATGTCGCCTGACGACATCGTGGACACACGACCCGATCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGCCGAGAGGATGCCGAGACATAACATAATGGCTACGACAATAGATTGTCGAATCAAAACAATGAAAAGAGCATTCCAAGCGATATTTAAAATGAAGGGCCCGAC
GTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTTGACAGTTGGGTGAAGAGTCATCCTACTGCCAAGAGCCTCCTAAACAAGC
CCTTTCCCCATTACGACGACCTGTGCTACATATTTAGGAAAGATTGTGCGACGGGAGCACACACGAAGACATTCGTCGATGTGGGGTCGAATGTACCTAAAGGGTATGGG
GGCTTTTCCGCTGACGATGGTCACGATATGGAGATCCCTATGATGTACATTCAGGGACTAGACATGTCGCCTGACGACATCGTGGACACACGACCCGATCGCTAG
Protein sequenceShow/hide protein sequence
MIAERMPRHNIMATTIDCRIKTMKRAFQAIFKMKGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPTAKSLLNKPFPHYDDLCYIFRKDCATGAHTKTFVDVGSNVPKGYG
GFSADDGHDMEIPMMYIQGLDMSPDDIVDTRPDR