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PI0017364 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017364
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr11:18775470..18775759
RNA-Seq ExpressionPI0017364
SyntenyPI0017364
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040451.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.3e-1876.56Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI
        MC+ SDV VGAM+GQRKDK+IH I Y SKTLNE QENYTTTEKELL V FAIEKY SYI G+K+
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI

KAA0056421.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]9.5e-1860.42Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSK-----------IFDGEKVCQATINKMDIITSRI
        M + SDV VGAMLGQ++DKMIH   Y SKTLNE QENYTTT+KELLAV F IEKY SYI GSK           IFDG+       N+MDII  RI
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSK-----------IFDGEKVCQATINKMDIITSRI

KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]6.6e-1978.12Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI
        MC+ SDVV+GAMLGQ+ DK+I+ IY  SKTLNEAQENYTTTEKELLAV FAIEKY+SYI GSK+
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI

TYK28899.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.3e-1876.56Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI
        MC+ SDV VGAM+GQRKDK+IH I Y SKTLNE QENYTTTEKELL V FAIEKY SYI G+K+
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI

XP_038707281.1 uncharacterized protein LOC120002591, partial [Tripterygium wilfordii]2.1e-1760.49Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSK--IFDGEKVCQATINKMD
        MC+ SDV VGA+LGQRK+K  H IYYASKTLN+AQ NYTTTEKELLA+ FA++K+ SY+ GSK  IF      +  ++K D
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSK--IFDGEKVCQATINKMD

TrEMBL top hitse value%identityAlignment
A0A5A7TFL9 Transposon Ty3-I Gag-Pol polyprotein2.1e-1876.56Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI
        MC+ SDV VGAM+GQRKDK+IH I Y SKTLNE QENYTTTEKELL V FAIEKY SYI G+K+
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI

A0A5A7US86 Retrovirus-related Pol polyprotein from transposon 17.64.6e-1860.42Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSK-----------IFDGEKVCQATINKMDIITSRI
        M + SDV VGAMLGQ++DKMIH   Y SKTLNE QENYTTT+KELLAV F IEKY SYI GSK           IFDG+       N+MDII  RI
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSK-----------IFDGEKVCQATINKMDIITSRI

A0A5A7V8R9 RT_RNaseH domain-containing protein3.2e-1978.12Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI
        MC+ SDVV+GAMLGQ+ DK+I+ IY  SKTLNEAQENYTTTEKELLAV FAIEKY+SYI GSK+
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI

A0A5D3DZR6 Transposon Ty3-I Gag-Pol polyprotein2.1e-1876.56Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI
        MC+ SDV VGAM+GQRKDK+IH I Y SKTLNE QENYTTTEKELL V FAIEKY SYI G+K+
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKI

A0A6P5N6R9 uncharacterized protein LOC1102786433.9e-1768.18Show/hide
Query:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKIFD
        MC+ SD  VGA+LGQRKDK++H IYYASK LN+ Q+NYTTTEKELLA+ FA +KY  Y+ GSKI D
Subjt:  MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKIFD

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.5e-0544.07Show/hide
Query:  NTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITG
        + SDV +GA+L Q      H + Y S+TLNE + NY+T EKELLA+ +A + +  Y+ G
Subjt:  NTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus9.6e-0535Show/hide
Query:  NTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGS
        + S+  +GA+L Q        I Y S++LN+ +ENY T EKE+LA+ ++++   +Y+ G+
Subjt:  NTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAACACAAGTGATGTGGTGGTAGGGGCTATGTTGGGTCAAAGAAAAGATAAAATGATCCACCAAATATACTACGCGAGCAAAACCTTGAATGAAGCTCAAGAGAA
CTACACAACTACGGAAAAGGAATTGCTTGCGGTAGCATTTGCAATTGAAAAGTACATGAGCTACATCACTGGTTCCAAAATATTTGATGGCGAAAAAGTATGTCAAGCCA
CGATTAATAAGATGGATATTATTACTTCAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAACACAAGTGATGTGGTGGTAGGGGCTATGTTGGGTCAAAGAAAAGATAAAATGATCCACCAAATATACTACGCGAGCAAAACCTTGAATGAAGCTCAAGAGAA
CTACACAACTACGGAAAAGGAATTGCTTGCGGTAGCATTTGCAATTGAAAAGTACATGAGCTACATCACTGGTTCCAAAATATTTGATGGCGAAAAAGTATGTCAAGCCA
CGATTAATAAGATGGATATTATTACTTCAAGAATTTGA
Protein sequenceShow/hide protein sequence
MCNTSDVVVGAMLGQRKDKMIHQIYYASKTLNEAQENYTTTEKELLAVAFAIEKYMSYITGSKIFDGEKVCQATINKMDIITSRI