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PI0017416 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017416
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:10029904..10030585
RNA-Seq ExpressionPI0017416
SyntenyPI0017416
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-1840.46Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTW--------DLMCQTV---------LMTMFHL-VD
        M+GPSCSGFGWNEE+QCIIAER LFDSWVK                       G+         T+        ++   T+         + TM+   V 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTW--------DLMCQTV---------LMTMFHL-VD

Query:  QAKDEIVQVEVR--------GN---GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
         + DE+  +           GN    AIADW KEKRA E+E+R +VVKQLQDIP+LR + R KLMQI+FRS++
Subjt:  QAKDEIVQVEVR--------GN---GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

KAA0063430.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.3e-1257.83Show/hide
Query:  HLVDQAKDEIVQVEVRGNG-----------------AIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
        H V Q +++IV+VEVRG                   AIA+WPKEKRATEVEL VEVVKQLQDIP+L+ +DR KLMQI+FRSV+
Subjt:  HLVDQAKDEIVQVEVRGNG-----------------AIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

KGN66636.1 hypothetical protein Csa_007482 [Cucumis sativus]2.1e-3768.85Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWV--------KIGQQEHMRRPLLTWDLMCQTVLMTMFHLVDQAKDEIVQVEVRGNGAIADWPKEKRATEVELR
        M+GPSCS FGWNEEYQCI+ E++LFDSWV        KIG QEH +R LL W  MCQT+LMT+F LVDQ K+EIV VEV+GN AI  WPKE+RAT+VEL 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWV--------KIGQQEHMRRPLLTWDLMCQTVLMTMFHLVDQAKDEIVQVEVRGNGAIADWPKEKRATEVELR

Query:  VEVVKQLQDIPKLRIRDRVKLM
        VEVVKQLQDIP+L+ R RVKLM
Subjt:  VEVVKQLQDIPKLRIRDRVKLM

TYK07962.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1336.6Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVKIGQQEHMRRPLLTWDLMCQTV-------------------LMTMFH----LVDQAKDEIVQVEVRG----
        M+  S   FGWNEE+QCI+A+ + FDSW     +  + +    +D +                       ++ MF+    L D    +I  +  +G    
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVKIGQQEHMRRPLLTWDLMCQTV-------------------LMTMFH----LVDQAKDEIVQVEVRG----

Query:  ----NGAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
             G   DWPKEK ATEVEL  +VVKQLQ IP+LR +DR KL+QI+FRSV+
Subjt:  ----NGAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.8e-1837.37Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTWDLMCQTV-----------------LMTMFHL-VD
        M+GPSCSGFGWNEE+QCIIAER LFDSW+K                       G+         T+  +   V                 + TM+   V 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTWDLMCQTV-----------------LMTMFHL-VD

Query:  QAKDEI----------------VQVEVRGN--------------------GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
         + DE+                V    RG+                     AIADWPKEKRA EVE+R +VVKQLQDIPKLR +DR KLMQI+FRS++
Subjt:  QAKDEI----------------VQVEVRGN--------------------GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

TrEMBL top hitse value%identityAlignment
A0A0A0M343 Uncharacterized protein9.9e-3868.85Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWV--------KIGQQEHMRRPLLTWDLMCQTVLMTMFHLVDQAKDEIVQVEVRGNGAIADWPKEKRATEVELR
        M+GPSCS FGWNEEYQCI+ E++LFDSWV        KIG QEH +R LL W  MCQT+LMT+F LVDQ K+EIV VEV+GN AI  WPKE+RAT+VEL 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWV--------KIGQQEHMRRPLLTWDLMCQTVLMTMFHLVDQAKDEIVQVEVRGNGAIADWPKEKRATEVELR

Query:  VEVVKQLQDIPKLRIRDRVKLM
        VEVVKQLQDIP+L+ R RVKLM
Subjt:  VEVVKQLQDIPKLRIRDRVKLM

A0A1S3B4L3 uncharacterized protein LOC1034859532.3e-1837.37Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTWDLMCQTV-----------------LMTMFHL-VD
        M+GPSCSGFGWNEE+QCIIAER LFDSW+K                       G+         T+  +   V                 + TM+   V 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTWDLMCQTV-----------------LMTMFHL-VD

Query:  QAKDEI----------------VQVEVRGN--------------------GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
         + DE+                V    RG+                     AIADWPKEKRA EVE+R +VVKQLQDIPKLR +DR KLMQI+FRS++
Subjt:  QAKDEI----------------VQVEVRGN--------------------GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

A0A5A7U0H7 Retrotransposon protein2.3e-1837.37Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTWDLMCQTV-----------------LMTMFHL-VD
        M+GPSCSGFGWNEE+QCIIAER LFDSW+K                       G+         T+  +   V                 + TM+   V 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTWDLMCQTV-----------------LMTMFHL-VD

Query:  QAKDEI----------------VQVEVRGN--------------------GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
         + DE+                V    RG+                     AIADWPKEKRA EVE+R +VVKQLQDIPKLR +DR KLMQI+FRS++
Subjt:  QAKDEI----------------VQVEVRGN--------------------GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

A0A5D3C9I2 Retrotransposon protein5.9e-1436.6Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVKIGQQEHMRRPLLTWDLMCQTV-------------------LMTMFH----LVDQAKDEIVQVEVRG----
        M+  S   FGWNEE+QCI+A+ + FDSW     +  + +    +D +                       ++ MF+    L D    +I  +  +G    
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVKIGQQEHMRRPLLTWDLMCQTV-------------------LMTMFH----LVDQAKDEIVQVEVRG----

Query:  ----NGAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
             G   DWPKEK ATEVEL  +VVKQLQ IP+LR +DR KL+QI+FRSV+
Subjt:  ----NGAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

A0A5D3DG22 Retrotransposon protein2.3e-1840.46Show/hide
Query:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTW--------DLMCQTV---------LMTMFHL-VD
        M+GPSCSGFGWNEE+QCIIAER LFDSWVK                       G+         T+        ++   T+         + TM+   V 
Subjt:  MKGPSCSGFGWNEEYQCIIAERKLFDSWVK----------------------IGQQEHMRRPLLTW--------DLMCQTV---------LMTMFHL-VD

Query:  QAKDEIVQVEVR--------GN---GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD
         + DE+  +           GN    AIADW KEKRA E+E+R +VVKQLQDIP+LR + R KLMQI+FRS++
Subjt:  QAKDEIVQVEVR--------GN---GAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDRVKLMQIIFRSVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGCCATCCTGTAGTGGATTTGGATGGAATGAAGAATATCAATGCATCATCGCAGAACGGAAGTTGTTTGATAGTTGGGTCAAGATCGGGCAACAGGAGCACAT
GCGGAGACCTTTGTTGACGTGGGATCTAATGTGCCAGACAGTTTTAATGACGATGTTCCACTTGGTCGATCAAGCGAAAGACGAAATTGTTCAAGTGGAAGTAAGAGGAA
ACGGGGCAATTGCAGATTGGCCAAAAGAAAAGCGTGCAACAGAGGTTGAATTACGTGTTGAAGTTGTGAAACAACTGCAAGATATCCCTAAACTACGGATTCGAGATAGG
GTAAAGCTTATGCAAATCATATTTCGTAGTGTGGATGACACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGCCATCCTGTAGTGGATTTGGATGGAATGAAGAATATCAATGCATCATCGCAGAACGGAAGTTGTTTGATAGTTGGGTCAAGATCGGGCAACAGGAGCACAT
GCGGAGACCTTTGTTGACGTGGGATCTAATGTGCCAGACAGTTTTAATGACGATGTTCCACTTGGTCGATCAAGCGAAAGACGAAATTGTTCAAGTGGAAGTAAGAGGAA
ACGGGGCAATTGCAGATTGGCCAAAAGAAAAGCGTGCAACAGAGGTTGAATTACGTGTTGAAGTTGTGAAACAACTGCAAGATATCCCTAAACTACGGATTCGAGATAGG
GTAAAGCTTATGCAAATCATATTTCGTAGTGTGGATGACACATAG
Protein sequenceShow/hide protein sequence
MKGPSCSGFGWNEEYQCIIAERKLFDSWVKIGQQEHMRRPLLTWDLMCQTVLMTMFHLVDQAKDEIVQVEVRGNGAIADWPKEKRATEVELRVEVVKQLQDIPKLRIRDR
VKLMQIIFRSVDDT