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PI0017421 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017421
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:21628956..21629285
RNA-Seq ExpressionPI0017421
SyntenyPI0017421
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-2258.25Show/hide
Query:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR
        M+F  MY+QGL+MS DD+MGTR+ W+ + R  SSGSKRKR G +    +IIR+ +EY N+QL  IAEWP  QRQDAS T  EVVRQL+ I EL+ +DR R
Subjt:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR

Query:  CMR
         MR
Subjt:  CMR

KAA0048317.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-2158.82Show/hide
Query:  FSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRCM
        FS MYS GL+MSPDD+M TR+  +S+ R  SSGSKRKR G A    +I+R A+EY N+QL  IAEWP  QRQDA+ T  E+VRQL+ I EL+ +DR R M
Subjt:  FSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRCM

Query:  RN
        RN
Subjt:  RN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-2364.08Show/hide
Query:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR
        ME   MYSQG+DM  DDIMGTR    ++ R GSSGSKRK+GGQA+   EIIR+ ME++ND+LKAI EW   QRQDAS    EVVRQLQ I ELSR DRVR
Subjt:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR

Query:  CMR
         M+
Subjt:  CMR

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2159.41Show/hide
Query:  EFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRC
        +F  MYSQGL+MSPDD+MGTR+  +S+ R  SSGSKRKR G A    +I+R+A+EY N+QL  IAEWP  QRQ+AS T  EVVRQL+ I EL  +DR R 
Subjt:  EFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRC

Query:  M
        M
Subjt:  M

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-2464.71Show/hide
Query:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR
        ME  TMYS+GLDMS   I GTR G  ++ RAG S SK+K+GGQ++   EIIR+ MEYANDQLKAIAEWP  Q QDAS T  E VRQLQGI ELSRLD+  
Subjt:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR

Query:  CM
        C+
Subjt:  CM

TrEMBL top hitse value%identityAlignment
A0A5A7TDD6 Retrotransposon protein1.8e-2258.25Show/hide
Query:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR
        M+F  MY+QGL+MS DD+MGTR+ W+ + R  SSGSKRKR G +    +IIR+ +EY N+QL  IAEWP  QRQDAS T  EVVRQL+ I EL+ +DR R
Subjt:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR

Query:  CMR
         MR
Subjt:  CMR

A0A5A7U7R0 Retrotransposon protein1.5e-2157.43Show/hide
Query:  EFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRC
        +F  MYSQGL+MSPDD+MGTR+  +S+ R   SGSKRKR G A    +I+R+A+EY N+Q+  IAEWP  QRQDAS T  E+VRQL+ I EL+ +DR R 
Subjt:  EFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRC

Query:  M
        M
Subjt:  M

A0A5A7V469 Retrotransposon protein7.2e-2464.08Show/hide
Query:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR
        ME   MYSQG+DM  DDIMGTR    ++ R GSSGSKRK+GGQA+   EIIR+ ME++ND+LKAI EW   QRQDAS    EVVRQLQ I ELSR DRVR
Subjt:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR

Query:  CMR
         M+
Subjt:  CMR

A0A5A7VBC5 Retrotransposon protein6.7e-2259.41Show/hide
Query:  EFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRC
        +F  MYSQGL+MSPDD+MGTR+  +S+ R  SSGSKRKR G A    +I+R+A+EY N+QL  IAEWP  QRQ+AS T  EVVRQL+ I EL  +DR R 
Subjt:  EFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRC

Query:  M
        M
Subjt:  M

A0A5D3CL79 Retrotransposon protein1.9e-2464.71Show/hide
Query:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR
        ME  TMYS+GLDMS   I GTR G  ++ RAG S SK+K+GGQ++   EIIR+ MEYANDQLKAIAEWP  Q QDAS T  E VRQLQGI ELSRLD+  
Subjt:  MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVR

Query:  CM
        C+
Subjt:  CM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTCGACGATGTACAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGTACACGATCTGGTTGGTTGTCTAAGGCTAGGGCTGGTTCGAGTGGTTCGAA
GAGAAAACGGGGAGGGCAAGCATTGGGGGTGGCAGAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGC
AAGATGCAAGCATGACACATGCGGAAGTCGTTAGACAACTACAGGGAATCTCGGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTAATGATGCGCAACGTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTTCGACGATGTACAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGTACACGATCTGGTTGGTTGTCTAAGGCTAGGGCTGGTTCGAGTGGTTCGAA
GAGAAAACGGGGAGGGCAAGCATTGGGGGTGGCAGAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGC
AAGATGCAAGCATGACACATGCGGAAGTCGTTAGACAACTACAGGGAATCTCGGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTAATGATGCGCAACGTGGATGA
Protein sequenceShow/hide protein sequence
MEFSTMYSQGLDMSPDDIMGTRSGWLSKARAGSSGSKRKRGGQALGVAEIIRSAMEYANDQLKAIAEWPKEQRQDASMTHAEVVRQLQGISELSRLDRVRCMRNDAQRG