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PI0017426 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017426
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein RADIALIS-like 3
Genome locationchr01:6077488..6079632
RNA-Seq ExpressionPI0017426
SyntenyPI0017426
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055424.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa]7.4e-4395.7Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL

KGN43156.2 hypothetical protein Csa_020475 [Cucumis sativus]1.2e-4097.73Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELR
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELR
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELR

XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]6.0e-4597.92Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

XP_008447023.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]2.4e-46100Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]6.9e-4189.58Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS DEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein2.9e-4597.92Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 31.2e-46100Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

A0A5D3DF44 Protein RADIALIS-like 33.6e-4395.7Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL

A0A6J1GKW1 protein RADIALIS-like 31.1e-3988.54Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEILLEDL +IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 32.4e-3987.5Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSADEV+RHYEILLEDL++IESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.1e-2252.48Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL
        MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L++D+  IE+G VP PNYR   G +N    +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 63.0e-2355Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL+EDL  IE+GRVP+PNY+       S  D + R +K LK+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS3.7e-2154.22Show/hide
Query:  WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGT-SNRDEELRLLKYLKLQ
        W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ +EV++HYEIL+ED++ IESG+VP PNYR T  N   + +  + LK++
Subjt:  WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGT-SNRDEELRLLKYLKLQ

Q6NNN0 Protein RADIALIS-like 32.3e-2360.98Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSN
        MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR   N
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSN

Q8GW75 Protein RADIALIS-like 51.2e-2455.34Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL
        MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL+EDL  IE   VP+P Y+    G+ +R   D +LRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 58.7e-2655.34Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL
        MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL+EDL  IE   VP+P Y+    G+ +R   D +LRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 61.4e-2362.82Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR

AT1G75250.2 RAD-like 62.1e-2455Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL+EDL  IE+GRVP+PNY+       S  D + R +K LK+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL

AT2G18328.1 RAD-like 45.8e-2259.26Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTS
        MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS +EV+RHYE+LL D+  IESGR P P YR T+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTS

AT4G39250.1 RAD-like 18.2e-2452.48Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL
        MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L++D+  IE+G VP PNYR   G +N    +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAAACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAG
ATGGCAAAATATCGCCACTGCGGTCGGGGGGAAGTCGGCCGACGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTTCGGCAGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACAGAGGCACTAGCAATCGAGATGAAGAGTTGAGGTTGTTAAAGTATCTGAAACTTCAATGA
mRNA sequenceShow/hide mRNA sequence
CTCCTCTCTCTTTCTCCTTTCGCCGACACACATATTCTTCCAACTTGCTTCTAATATTTCATATATAAATCTCTCTCATTTCTCCTTTACATCTCCAAAAAAAAAAAAAT
TCTCTTTTTTTCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAAACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAA
GATACGCCTGAGAGATGGCAAAATATCGCCACTGCGGTCGGGGGGAAGTCGGCCGACGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTTCGGCAGATCGAGTC
CGGTCGTGTTCCTATTCCCAATTACAGAGGCACTAGCAATCGAGATGAAGAGTTGAGGTTGTTAAAGTATCTGAAACTTCAATGAAGAACTTGCCTACCACTGCCACTGT
TCTCTTTCAATCTCTCATCAAACACAAATGGCTCACTTGGCCTAGGTGGATTCATAACTATTCTAATGTACAAGTTTTATATCTTTTAAATCAACTTTCTCTCAATAAAA
AGTGTACAACCTACAATCTATTTATCAATATAATTTTGTTATATTTTCAGAATTAAA
Protein sequenceShow/hide protein sequence
MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ