; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0017445 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017445
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationtig00000638:46019..47805
RNA-Seq ExpressionPI0017445
SyntenyPI0017445
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABI97454.1 ribosomal protein L16, partial [Cucumis sativus]2.1e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

AHM88685.1 ribosomal protein L16 [Lagenaria siceraria]7.9e-6198.35Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

YP_004841821.1 ribosomal protein L16 [Cucumis melo subsp. melo]2.1e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

YP_009753126.1 ribosomal protein L16 [Corallocarpus boehmii]7.9e-6198.35Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAI+IAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

YP_010131131.1 50S ribosomal protein L16 [Benincasa hispida]3.6e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

TrEMBL top hitse value%identityAlignment
A0A1S4EU42 50S ribosomal protein L16, chloroplastic1.0e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

A0A1X9Q1F7 50S ribosomal protein L16, chloroplastic (Fragment)1.0e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

A0A218KG73 50S ribosomal protein L16, chloroplastic1.0e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

A0A6M8Y6H6 50S ribosomal protein L16, chloroplastic1.0e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

W8E710 Ribosomal protein L161.0e-6199.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

SwissProt top hitse value%identityAlignment
B1NWI7 50S ribosomal protein L16, chloroplastic1.3e-6191.2Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA
        ++  GRMKGI++RGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+ GVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA

Query:  ENIARKAISIAASKMPIRTQFITSG
        ENIARKAISIAASKMPIRTQFI SG
Subjt:  ENIARKAISIAASKMPIRTQFITSG

Q09ME0 50S ribosomal protein L16, chloroplastic2.0e-6292.8Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA
        ++  GRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA

Query:  ENIARKAISIAASKMPIRTQFITSG
        ENIARKAISIAASKMPIRTQFI SG
Subjt:  ENIARKAISIAASKMPIRTQFITSG

Q0ZIY1 50S ribosomal protein L16, chloroplastic1.3e-6191.2Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA
        ++  GRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYE+ GVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA

Query:  ENIARKAISIAASKMPIRTQFITSG
        ENIARKAISIAASKMPIRTQFI SG
Subjt:  ENIARKAISIAASKMPIRTQFITSG

Q2L940 50S ribosomal protein L16, chloroplastic9.7e-6291.2Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA
        ++  GRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA

Query:  ENIARKAISIAASKMPIRTQFITSG
        ENIARKAISIAASKMPI+TQFI SG
Subjt:  ENIARKAISIAASKMPIRTQFITSG

Q4VZN1 50S ribosomal protein L16, chloroplastic2.7e-6499.17Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIA

Query:  RKAISIAASKMPIRTQFITSG
        RKAISIAASKMPIRTQFITSG
Subjt:  RKAISIAASKMPIRTQFITSG

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 122.8e-4069.23Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARKA
        KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YE+ GV+E +AR+A
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARKA

Query:  ISIAASKMPIRTQFITS
        ISIAASK+P +T+FI S
Subjt:  ISIAASKMPIRTQFITS

ATCG00790.1 ribosomal protein L163.0e-5885.48Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA
        ++  GR+KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYE+ GV 
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVA

Query:  ENIARKAISIAASKMPIRTQFITS
        ENIARKAISIAASKMPI+TQFI S
Subjt:  ENIARKAISIAASKMPIRTQFITS

ATMG00080.1 ribosomal protein L162.9e-2142.64Show/hide
Query:  RTGR-MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRIL
        R GR  +G    G  + FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I 
Subjt:  RTGR-MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRIL

Query:  YEISGVAENIARKAISIAASKMPIRTQFI
        +E+ GV+   AR+A ++AA K    T+F+
Subjt:  YEISGVAENIARKAISIAASKMPIRTQFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGAGAAGGACGGGAAGAATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACAC
GTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATAAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATT
TCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGAGAAGGACGGGAAGAATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACAC
GTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATAAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATT
TCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG
Protein sequenceShow/hide protein sequence
MDQRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARKAI
SIAASKMPIRTQFITSG