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PI0017464 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017464
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:8606012..8606755
RNA-Seq ExpressionPI0017464
SyntenyPI0017464
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-1935.83Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVK----------GGFERFEEE------------------------TRRTGVR------------GGGNYSQC
        MRGP C+GFGWNDE KCI+AEK+++N+W+K           G++ F  +                        TR   VR              G+ +  
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVK----------GGFERFEEE------------------------TRRTGVR------------GGGNYSQC

Query:  HGICERLAEGHCRMTQRTT--PRCKR-----ARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
          I   L E            P  +R      R EVV+QL+ IPEL+ +DR R MRI+M NVDDMKAFLDV + +K  YC++IL++N
Subjt:  HGICERLAEGHCRMTQRTT--PRCKR-----ARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

KAA0054553.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1836.63Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVRG------GGNYSQCHGICERLAEGHCRMTQRTTPRCKRA-
        MRGP C+ FGWNDE KCI+AEK+++++W     KG     F  ++E      +   TG R       G N    + +    A      +   +PR   + 
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVRG------GGNYSQCHGICERLAEGHCRMTQRTTPRCKRA-

Query:  -----------------RVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
                         R E+V+QL+ IPEL+ +DR R MRI+M NVDDMKAFL+V D +K  YC++IL++N
Subjt:  -----------------RVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

KAA0064259.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1834.01Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG-------------------------------------
        MRGP C+GFGWNDE KCI+AEK++ +NWVK            F  ++E      + R TG R                                      
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG-------------------------------------

Query:  ---GGNYSQCHGICERLAEGHCRMTQRTT-------PRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
            G  +    I     E       R             + R EVV+QL  IPEL+ +DR R MRI+MHNVDDMKAFL+V D +K  YC++IL++N
Subjt:  ---GGNYSQCHGICERLAEGHCRMTQRTT-------PRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-1937.85Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG------GGN---------------------YSQCHGI
        MRGP C+GFGWNDE KCI+ EK+++++WVK            F  ++E      + R  G R       G N                     YSQ  G+
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG------GGN---------------------YSQCHGI

Query:  CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
           L E     T   +    + R EVV+QL+ IPEL+ +DR   MRI+M NVDDMKAFL+V D +K  YC+ IL++N
Subjt:  CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

TYK11111.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1836.32Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVR--------------------------GGGNYSQCHGI---
        MRGP C+GFGWNDE KCI+AEK+++++W    VKG     F  ++E      + R TG R                          G       H I   
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVR--------------------------GGGNYSQCHGI---

Query:  -------------CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
                       R+AE      Q  T    + R E+V+QL+ IPEL+ +DR R MRI+M NVDDMKAFL+V D +K  YC++IL++N
Subjt:  -------------CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

TrEMBL top hitse value%identityAlignment
A0A5A7TDD6 Retrotransposon protein2.3e-1935.83Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVK----------GGFERFEEE------------------------TRRTGVR------------GGGNYSQC
        MRGP C+GFGWNDE KCI+AEK+++N+W+K           G++ F  +                        TR   VR              G+ +  
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVK----------GGFERFEEE------------------------TRRTGVR------------GGGNYSQC

Query:  HGICERLAEGHCRMTQRTT--PRCKR-----ARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
          I   L E            P  +R      R EVV+QL+ IPEL+ +DR R MRI+M NVDDMKAFLDV + +K  YC++IL++N
Subjt:  HGICERLAEGHCRMTQRTT--PRCKR-----ARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

A0A5A7UF28 Retrotransposon protein5.0e-1936.63Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVRG------GGNYSQCHGICERLAEGHCRMTQRTTPRCKRA-
        MRGP C+ FGWNDE KCI+AEK+++++W     KG     F  ++E      +   TG R       G N    + +    A      +   +PR   + 
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVRG------GGNYSQCHGICERLAEGHCRMTQRTTPRCKRA-

Query:  -----------------RVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
                         R E+V+QL+ IPEL+ +DR R MRI+M NVDDMKAFL+V D +K  YC++IL++N
Subjt:  -----------------RVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

A0A5A7VFF1 Retrotransposon protein1.9e-1834.01Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG-------------------------------------
        MRGP C+GFGWNDE KCI+AEK++ +NWVK            F  ++E      + R TG R                                      
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG-------------------------------------

Query:  ---GGNYSQCHGICERLAEGHCRMTQRTT-------PRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
            G  +    I     E       R             + R EVV+QL  IPEL+ +DR R MRI+MHNVDDMKAFL+V D +K  YC++IL++N
Subjt:  ---GGNYSQCHGICERLAEGHCRMTQRTT-------PRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

A0A5D3C1J4 Retrotransposon protein2.3e-1937.85Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG------GGN---------------------YSQCHGI
        MRGP C+GFGWNDE KCI+ EK+++++WVK            F  ++E      + R  G R       G N                     YSQ  G+
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNWVKG----------GFERFEE------ETRRTGVRG------GGN---------------------YSQCHGI

Query:  CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
           L E     T   +    + R EVV+QL+ IPEL+ +DR   MRI+M NVDDMKAFL+V D +K  YC+ IL++N
Subjt:  CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

A0A5D3CH30 Retrotransposon protein6.6e-1936.32Show/hide
Query:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVR--------------------------GGGNYSQCHGI---
        MRGP C+GFGWNDE KCI+AEK+++++W    VKG     F  ++E      + R TG R                          G       H I   
Subjt:  MRGPMCNGFGWNDELKCIIAEKDLYNNW----VKG----GFERFEE------ETRRTGVR--------------------------GGGNYSQCHGI---

Query:  -------------CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN
                       R+AE      Q  T    + R E+V+QL+ IPEL+ +DR R MRI+M NVDDMKAFL+V D +K  YC++IL++N
Subjt:  -------------CERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVDDMKAFLDVSDELKLDYCTVILEDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCAATGTGCAATGGATTCGGTTGGAATGATGAGCTCAAATGCATTATTGCCGAGAAAGACTTGTACAACAATTGGGTGAAGGGTGGGTTCGAGCGGTTCGA
AGAGGAAACGAGGAGGACAGGCGTTCGAGGCGGCGGAAATTATTCGCAGTGCCATGGAATATGCGAACGACTAGCTGAAGGTCATTGCAGAATGACCCAAAGAACAACGC
CAAGATGCAAGCGTGCACGTGTGGAAGTCGTTAAACAACTACAGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATGATGCACAATGTGGAT
GACATGAAAGCATTTCTAGACGTCTCAGACGAGCTTAAATTGGATTACTGCACGGTCATTCTCGAAGATAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCCAATGTGCAATGGATTCGGTTGGAATGATGAGCTCAAATGCATTATTGCCGAGAAAGACTTGTACAACAATTGGGTGAAGGGTGGGTTCGAGCGGTTCGA
AGAGGAAACGAGGAGGACAGGCGTTCGAGGCGGCGGAAATTATTCGCAGTGCCATGGAATATGCGAACGACTAGCTGAAGGTCATTGCAGAATGACCCAAAGAACAACGC
CAAGATGCAAGCGTGCACGTGTGGAAGTCGTTAAACAACTACAGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATGATGCACAATGTGGAT
GACATGAAAGCATTTCTAGACGTCTCAGACGAGCTTAAATTGGATTACTGCACGGTCATTCTCGAAGATAATGCTTGA
Protein sequenceShow/hide protein sequence
MRGPMCNGFGWNDELKCIIAEKDLYNNWVKGGFERFEEETRRTGVRGGGNYSQCHGICERLAEGHCRMTQRTTPRCKRARVEVVKQLQGIPELSRLDRVRCMRIMMHNVD
DMKAFLDVSDELKLDYCTVILEDNA