; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0017486 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017486
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr02:16741486..16743492
RNA-Seq ExpressionPI0017486
SyntenyPI0017486
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042134.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-2248.39Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V+VA+E D+CR FE GLR EIRTPV A   W +FS+ VE  LHVE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKA--------MTSTFSGEDERK
        EK A        + S F G ++R+
Subjt:  EKKA--------MTSTFSGEDERK

KAA0045364.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]4.6e-2251.72Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V++A+E D+CR FE GLR EIRTPV A V W +FS+ VE  L VE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKAM-----TSTFSG
        EK A+     TST SG
Subjt:  EKKAM-----TSTFSG

KAA0056288.1 uncharacterized protein E6C27_scaffold226G00600 [Cucumis melo var. makuwa]1.6e-2252.59Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V+VA+E D+CR FE GLR EIRTPV A   W +FS+ VE  LHVE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKAM-----TSTFSG
        EK A+     TST SG
Subjt:  EKKAM-----TSTFSG

KAA0059911.1 reverse transcriptase [Cucumis melo var. makuwa]5.9e-2245.33Show/hide
Query:  MLEERKHGEG--WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFV
        +L  R  G    WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V+VA+E D+CR FE GLR EIRTPV A   W +FS+ V
Subjt:  MLEERKHGEG--WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFV

Query:  EATLHVEKSLTKEKKAM-----TSTFSGEDERKSVDCEKDTLAPPISLPS
        E  L VE+S+T+EK A+     TST SG        CE+    P I++ S
Subjt:  EATLHVEKSLTKEKKAM-----TSTFSGEDERKSVDCEKDTLAPPISLPS

KAA0060864.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]2.7e-2252.59Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY+ V+VA+E D+CR FE GLR EIRTPVIA   W +FS+ VE  L VE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKAM-----TSTFSG
        EK A+     TST SG
Subjt:  EKKAM-----TSTFSG

TrEMBL top hitse value%identityAlignment
A0A5A7TFC5 Reverse transcriptase2.2e-2248.39Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V+VA+E D+CR FE GLR EIRTPV A   W +FS+ VE  LHVE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKA--------MTSTFSGEDERK
        EK A        + S F G ++R+
Subjt:  EKKA--------MTSTFSGEDERK

A0A5A7TQH3 Gag protease polyprotein-like protein2.2e-2251.72Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V++A+E D+CR FE GLR EIRTPV A V W +FS+ VE  L VE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKAM-----TSTFSG
        EK A+     TST SG
Subjt:  EKKAM-----TSTFSG

A0A5A7V0L5 Retrotransposon protein, putative, Ty3-gypsy sub-class1.3e-2252.59Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY+ V+VA+E D+CR FE GLR EIRTPVIA   W +FS+ VE  L VE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKAM-----TSTFSG
        EK A+     TST SG
Subjt:  EKKAM-----TSTFSG

A0A5A7V2E0 Reverse transcriptase2.9e-2245.33Show/hide
Query:  MLEERKHGEG--WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFV
        +L  R  G    WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V+VA+E D+CR FE GLR EIRTPV A   W +FS+ V
Subjt:  MLEERKHGEG--WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFV

Query:  EATLHVEKSLTKEKKAM-----TSTFSGEDERKSVDCEKDTLAPPISLPS
        E  L VE+S+T+EK A+     TST SG        CE+    P I++ S
Subjt:  EATLHVEKSLTKEKKAM-----TSTFSGEDERKSVDCEKDTLAPPISLPS

A0A5D3BZQ5 Retrotrans_gag domain-containing protein7.6e-2352.59Show/hide
Query:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
        WQ F+  F +KY+   Y + ++DEFL L+Q  L V EYE+K+T+L+RY  V+VA+E D+CR FE GLR EIRTPV A   W +FS+ VE  LHVE+S+T+
Subjt:  WQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK

Query:  EKKAM-----TSTFSG
        EK A+     TST SG
Subjt:  EKKAM-----TSTFSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGAAGAAAGAAAACACGGTGAGGGATGGCAAAAGTTTAAAGAAGCATTCAATGAGAAATATTTCTTAGAGGCTTATAAAGATCAGAGGCAAGATGAGTTTTTACA
CTTGGAACAAGACGAGCTCAAGGTCGTGGAATATGAGAAGAAGTTTACAAAGTTGGCTAGGTATGTGATGGTGATGGTGGCCACTGAAGGAGATAAGTGCAGATGTTTCG
AAGCTGGATTAAGAAGCGAGATAAGAACACCAGTAATAGCTTTTGTCACATGGTATAGTTTTTCTAAGTTCGTTGAGGCAACTTTGCATGTTGAGAAGAGTTTGACAAAA
GAAAAGAAAGCGATGACATCCACATTTAGTGGAGAAGATGAAAGGAAGAGTGTAGATTGCGAAAAGGACACCTTAGCGCCGCCCATCTCCTTGCCGTCGGAGTCTGTCCT
GTGCCCGTGCCGCCTCGGGTTCGTTCGCGTAGCTTGGTCATTTCGCGAAGAGTGTCGAACGCAAACCCTTGTCATGTGCCGCATCCCTCGCAAGGCATTCCGCCTCTGGC
CATTTCCCCCTGTCCGCCTAGCGTTTCTCCTTGTCGCGGGCAGTCCAACTTGGAGTTTCCCTCTCCGTGAAATGCTGGCGTTCTATCACACGGTTCCCTCTGTCCGCGAA
CCACCTAGCGTTCAACTAGCCTTCTCCGCCGCGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGAAGAAAGAAAACACGGTGAGGGATGGCAAAAGTTTAAAGAAGCATTCAATGAGAAATATTTCTTAGAGGCTTATAAAGATCAGAGGCAAGATGAGTTTTTACA
CTTGGAACAAGACGAGCTCAAGGTCGTGGAATATGAGAAGAAGTTTACAAAGTTGGCTAGGTATGTGATGGTGATGGTGGCCACTGAAGGAGATAAGTGCAGATGTTTCG
AAGCTGGATTAAGAAGCGAGATAAGAACACCAGTAATAGCTTTTGTCACATGGTATAGTTTTTCTAAGTTCGTTGAGGCAACTTTGCATGTTGAGAAGAGTTTGACAAAA
GAAAAGAAAGCGATGACATCCACATTTAGTGGAGAAGATGAAAGGAAGAGTGTAGATTGCGAAAAGGACACCTTAGCGCCGCCCATCTCCTTGCCGTCGGAGTCTGTCCT
GTGCCCGTGCCGCCTCGGGTTCGTTCGCGTAGCTTGGTCATTTCGCGAAGAGTGTCGAACGCAAACCCTTGTCATGTGCCGCATCCCTCGCAAGGCATTCCGCCTCTGGC
CATTTCCCCCTGTCCGCCTAGCGTTTCTCCTTGTCGCGGGCAGTCCAACTTGGAGTTTCCCTCTCCGTGAAATGCTGGCGTTCTATCACACGGTTCCCTCTGTCCGCGAA
CCACCTAGCGTTCAACTAGCCTTCTCCGCCGCGAGCTGA
Protein sequenceShow/hide protein sequence
MLEERKHGEGWQKFKEAFNEKYFLEAYKDQRQDEFLHLEQDELKVVEYEKKFTKLARYVMVMVATEGDKCRCFEAGLRSEIRTPVIAFVTWYSFSKFVEATLHVEKSLTK
EKKAMTSTFSGEDERKSVDCEKDTLAPPISLPSESVLCPCRLGFVRVAWSFREECRTQTLVMCRIPRKAFRLWPFPPVRLAFLLVAGSPTWSFPLREMLAFYHTVPSVRE
PPSVQLAFSAAS