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PI0017499 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017499
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr01:17936001..17938303
RNA-Seq ExpressionPI0017499
SyntenyPI0017499
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026091.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1278.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VTD+DT ED+MTELEKK+NML+KAVE+RDYEIA LKNHIESRDAAES  ++
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

KAA0041857.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1278.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VT++DTSE++M ELEKKVNML+K VE+RDYEIAFLKNHIESRDAAES  +Y
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

KAA0061094.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1284.31Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAES
        M+V VTD+DTSED+MTELEKKVNML+KAVE+RD+EIA LKNHIESRDAAES
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAES

KAA0064216.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-1278.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VTD+D SED+M ELEKKVNML+K VE+RDYEIAFLKNHIESRDAAES  ++
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1278.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VTD+D SED+M ELEKKVNML+K VE+RDYEIAFLKNHIESRDAAES  ++
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

TrEMBL top hitse value%identityAlignment
A0A5A7TJG8 Ty3-gypsy retrotransposon protein5.8e-1378.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VT++DTSE++M ELEKKVNML+K VE+RDYEIAFLKNHIESRDAAES  +Y
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

A0A5A7V192 Ty3-gypsy retrotransposon protein7.6e-1384.31Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAES
        M+V VTD+DTSED+MTELEKKVNML+KAVE+RD+EIA LKNHIESRDAAES
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAES

A0A5A7VCV9 Retrotransposon gag protein7.6e-1378.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VTD+D SED+M ELEKKVNML+K VE+RDYEIAFLKNHIESRDAAES  ++
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

A0A5D3B8Y1 Ty3-gypsy retrotransposon protein5.8e-1378.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VTD+DT ED+MTELEKK+NML+KAVE+RDYEIA LKNHIESRDAAES  ++
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

A0A5D3D4X3 Ty3-gypsy retrotransposon protein7.6e-1378.18Show/hide
Query:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY
        MSV VTD+D SED+M ELEKKVNML+K VE+RDYEIAFLKNHIESRDAAES  ++
Subjt:  MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTTAAGGTGACTGACATGGATACAAGTGAAGACAAAATGACAGAGCTTGAAAAGAAGGTTAACATGCTCATAAAGGCAGTTGAAAAAAGGGATTATGAGATTGC
ATTTCTCAAGAATCACATCGAGAGTCGTGACGCTGCTGAATCAAGGTCTCGATATCCGTGCACTTCATCTTCTCCCTTCCTCCATTCCACACAAACCCTAGTCGCCGCCC
TTTATCGTCGTCCACCGTGTCTCGCCAGACGTCTCTCGCAAACGAAGCCAAAACGAGGAAGAAGCGTCCAATCCTTACCGTCCCGAGTCGAGGAGTCCTCGCGAAGCCGC
ACTGCCTACCGTCTAAGCCGAGCCACCGCACGCTGCCTTTTCTCTCAGTGTGACCCAGTAGAGCCTTTGAGACTGTTTGTGGTTCTGAAACCAAGTAGCAGAGCTTTGGG
TCAACTGCGGTGTAGGGAGCGTTCTCAGCAAGTCCCTCAGGGGTACCTGCATGTACGGTGTCCCTCGGGATCACCACCCTTACTGTTAGGACTGTATGCGTCCGACGGGC
CTCAGTCTGTCATGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTTAAGGTGACTGACATGGATACAAGTGAAGACAAAATGACAGAGCTTGAAAAGAAGGTTAACATGCTCATAAAGGCAGTTGAAAAAAGGGATTATGAGATTGC
ATTTCTCAAGAATCACATCGAGAGTCGTGACGCTGCTGAATCAAGGTCTCGATATCCGTGCACTTCATCTTCTCCCTTCCTCCATTCCACACAAACCCTAGTCGCCGCCC
TTTATCGTCGTCCACCGTGTCTCGCCAGACGTCTCTCGCAAACGAAGCCAAAACGAGGAAGAAGCGTCCAATCCTTACCGTCCCGAGTCGAGGAGTCCTCGCGAAGCCGC
ACTGCCTACCGTCTAAGCCGAGCCACCGCACGCTGCCTTTTCTCTCAGTGTGACCCAGTAGAGCCTTTGAGACTGTTTGTGGTTCTGAAACCAAGTAGCAGAGCTTTGGG
TCAACTGCGGTGTAGGGAGCGTTCTCAGCAAGTCCCTCAGGGGTACCTGCATGTACGGTGTCCCTCGGGATCACCACCCTTACTGTTAGGACTGTATGCGTCCGACGGGC
CTCAGTCTGTCATGCCATGA
Protein sequenceShow/hide protein sequence
MSVKVTDMDTSEDKMTELEKKVNMLIKAVEKRDYEIAFLKNHIESRDAAESRSRYPCTSSSPFLHSTQTLVAALYRRPPCLARRLSQTKPKRGRSVQSLPSRVEESSRSR
TAYRLSRATARCLFSQCDPVEPLRLFVVLKPSSRALGQLRCRERSQQVPQGYLHVRCPSGSPPLLLGLYASDGPQSVMP