CuGenDBv2

Gene ID	PI0017591
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr05:8471827..8473527
RNA-Seq Expression	PI0017591
Synteny	PI0017591
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-45

63.58

Show/hide

Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLHDELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-45

63.58

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Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLHDELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]

2.7e-45

62.96

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Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLH+ELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-45

63.58

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Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLH+ELLKKPQPV N CTD RWKWFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]

3.6e-45

62.35

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Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIHESD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETI RHFN++ LAV+RLHDELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

6.0e-46

63.58

Show/hide

Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLHDELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

A0A5A7TXW1 Retrotransposon protein

6.0e-46

63.58

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Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLHDELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

A0A5A7U476 Retrotransposon protein

7.8e-46

63.58

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Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLH+ELLKKPQPV N CTD RWKWFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

A0A5D3BDX0 Retrotransposon protein

1.7e-45

62.96

Show/hide

Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLH+ELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

A0A5D3BZB1 Retrotransposon protein

1.3e-45

62.96

Show/hide

Query:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF
        MD  E+A ++  F  SQ QLL+ LELL N  +RI H  Y+ RHRIRQLAYF MIH SD                   LLR   GL STE+VDVEEMV MF
Subjt:  MDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESD-------------------LLRMTVGLASTEIVDVEEMVVMF

Query:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE
        LH+L HDVKNRVIQREF+RS ETISRHFN+VLLAV+RLH+ELLKKPQPV N CTD RW+WFE
Subjt:  LHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.7e-06

36.78

Show/hide

Query:  DLLRMTVGLASTEIVDVEEMVVMFLHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACT----DPRWK
        DLL+    L  T  + +E  + +FL ++ H+++ R +Q  F  S ETISRHFN VL AV+ +  +     QP  N+ T    DP +K
Subjt:  DLLRMTVGLASTEIVDVEEMVVMFLHVLTHDVKNRVIQREFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACT----DPRWK

Sequences

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CDS sequence

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ATGCCCAATTCGGGTATGGAAATGGTTATTACTCTTGATCTTGCAATGGATCCACAAGAAATTGCTAAACTCCTAACCATGTTCACAACTTCTCAAAGTCAGTTACTAAT
GACGTTGGAGTTATTAATGAACGTCCATAGGAGGATACAACATACAGCATACGACGCTAGGCATAGAATTAGGCAGCTAGCGTACTTTTGCATGATCCATGAATCCGACC
TACTTAGGATGACTGTTGGATTAGCGTCGACGGAAATTGTCGACGTTGAGGAGATGGTCGTCATGTTCCTCCACGTACTCACGCACGACGTGAAGAATCGAGTGATCCAA
AGGGAGTTTGTGCGGTCGGATGAGACAATTTCTCGACATTTCAACATAGTCTTGTTGGCAGTGCTACGCCTACATGACGAGTTGTTAAAGAAACCTCAACCAGTAATGAA
CGCATGCACAGATCCCAGATGGAAGTGGTTTGAGGTAGGGTACTTTATGAACGGAGGATAG

mRNA sequence

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Protein sequence

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MPNSGMEMVITLDLAMDPQEIAKLLTMFTTSQSQLLMTLELLMNVHRRIQHTAYDARHRIRQLAYFCMIHESDLLRMTVGLASTEIVDVEEMVVMFLHVLTHDVKNRVIQ
REFVRSDETISRHFNIVLLAVLRLHDELLKKPQPVMNACTDPRWKWFEVGYFMNGG

PI0017591 (gene) of Melon (PI 482460) v1 genome