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PI0017612 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017612
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSm domain-containing protein
Genome locationchr12:6477694..6478032
RNA-Seq ExpressionPI0017612
SyntenyPI0017612
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444477.1 PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]5.4e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]7.5e-5599.11Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]2.0e-5294.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+SLDR+GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]5.4e-5395.54Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSNVESNP+SLDR+GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]2.7e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GSMVQDGSNVESNPESLDR+GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNIILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDE+LALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein3.6e-5599.11Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A1S3BAH4 uncharacterized protein LOC1034877842.6e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 22.6e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341499.9e-5394.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+SLDR+GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956148.4e-5292.86Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQ GSNVESNP+SLDR+GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
A2BIG9 N-alpha-acetyltransferase 38, NatC auxiliary subunit9.6e-0539.19Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS
        K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL +IP    VS  V++
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS

A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit5.7e-0535.35Show/hide
Query:  QESGGSMVQDGSNVESNPESLDRI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S        +S+ E+ D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNVESNPESLDRI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B3.0e-0632.95Show/hide
Query:  LDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'2.8e-0435.8Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPM---EQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+G F   DK  N+IL D  E+R  +  +       E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPM---EQRCLGLILIPNSCRVSCHVD

Q6GQ67 N-alpha-acetyltransferase 38-A, NatC auxiliary subunit3.3e-0536.36Show/hide
Query:  QESGGSMVQDGSNVESNPESLDRI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNVESNPESLDRI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein1.5e-3767.86Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +  S     S  E +    D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV

AT4G20440.2 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT4G20440.3 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCATTGCTA
TCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCATTGCTA
TCAGTTTAG
Protein sequenceShow/hide protein sequence
MEQESGGSMVQDGSNVESNPESLDRIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV