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PI0017634 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017634
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr07:19092176..19092664
RNA-Seq ExpressionPI0017634
SyntenyPI0017634
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]1.8e-6274.23Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FH+GVAGHV+QQC KFR KVQQLMD+KIL V++GQGK+E+K SKIC   DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+RNESTS+ NPK LTI+VPSPF+FK LKAVPWRYDCQVI+G  +DNI  ISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]1.4e-6273.62Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEA YV+ EYL+PNIRYEGY++S++ + HQGVAGHV+QQC KFR KVQQ MD+KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+ NESTS+ NPK LTI+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]1.7e-6374.85Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEARYV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD+KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+ N STS+ NPK L I+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]2.2e-6375.46Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD+KIL V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+ NESTS+ N K LTI+VPSPF+FK LKAVPW YDCQVI+G S+DNI GISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]1.8e-6275.32Show/hide
Query:  ESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQE
        E+LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQ+LMD+KIL V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT+FYQE
Subjt:  ESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQE

Query:  NRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        + NESTS+ NPK LTI+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Subjt:  NRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein8.9e-6374.23Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FH+GVAGHV+QQC KFR KVQQLMD+KIL V++GQGK+E+K SKIC   DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+RNESTS+ NPK LTI+VPSPF+FK LKAVPWRYDCQVI+G  +DNI  ISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

A0A5A7T7R4 Ribonuclease H6.8e-6373.62Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEA YV+ EYL+PNIRYEGY++S++ + HQGVAGHV+QQC KFR KVQQ MD+KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+ NESTS+ NPK LTI+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

A0A5A7TRL7 Ribonuclease H8.1e-6474.85Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEARYV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD+KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+ N STS+ NPK L I+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.1e-6375.46Show/hide
Query:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT
        MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD+KIL V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT
Subjt:  MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLT

Query:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        +FYQE+ NESTS+ N K LTI+VPSPF+FK LKAVPW YDCQVI+G S+DNI GISGITRSGR
Subjt:  IFYQENRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

A0A5D3DEB3 Retrotrans_gag domain-containing protein8.9e-6375.32Show/hide
Query:  ESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQE
        E+LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQ+LMD+KIL V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT+FYQE
Subjt:  ESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQE

Query:  NRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR
        + NESTS+ NPK LTI+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Subjt:  NRNESTSY-NPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCACTTTTTGAAAGTCTTTTTGAAGCAAGATATGTTAATAAGGAATATTTAAACCCCAATATAAGATATGAAGGGTATGATAAAAGCAAATATTTTGTATTTCA
TCAAGGCGTTGCAGGTCATGTTATTCAACAGTGCTACAAGTTTAGATTCAAAGTACAACAACTTATGGATGCAAAGATACTCAAGGTACATAAAGGACAAGGAAAAGAGG
AGGTGAAGGACAGTAAAATATGTGCATCAACGGATGAGGTTGTAGGAAAGGAAGATTCCTTTTTACCAAAGCCTTTAACGATTTTCTACCAAGAAAATCGTAATGAGTCA
ACTTCCTACAATCCTAAAATACTCACGATCCGAGTACCTAGTCCTTTCCAATTTAAGCATTTAAAAGCAGTGCCTTGGAGGTATGATTGTCAAGTCATATCAGGTCATTC
AATTGATAATATTAGAGGAATCAGTGGGATAACTCGAAGTGGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCACTTTTTGAAAGTCTTTTTGAAGCAAGATATGTTAATAAGGAATATTTAAACCCCAATATAAGATATGAAGGGTATGATAAAAGCAAATATTTTGTATTTCA
TCAAGGCGTTGCAGGTCATGTTATTCAACAGTGCTACAAGTTTAGATTCAAAGTACAACAACTTATGGATGCAAAGATACTCAAGGTACATAAAGGACAAGGAAAAGAGG
AGGTGAAGGACAGTAAAATATGTGCATCAACGGATGAGGTTGTAGGAAAGGAAGATTCCTTTTTACCAAAGCCTTTAACGATTTTCTACCAAGAAAATCGTAATGAGTCA
ACTTCCTACAATCCTAAAATACTCACGATCCGAGTACCTAGTCCTTTCCAATTTAAGCATTTAAAAGCAGTGCCTTGGAGGTATGATTGTCAAGTCATATCAGGTCATTC
AATTGATAATATTAGAGGAATCAGTGGGATAACTCGAAGTGGAAGATGA
Protein sequenceShow/hide protein sequence
MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNES
TSYNPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR