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PI0017650 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017650
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase core domain containing protein
Genome locationchr10:5409663..5410340
RNA-Seq ExpressionPI0017650
SyntenyPI0017650
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]2.0e-5263.48Show/hide
Query:  LEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQ
        LE HLTGE+ CP+ ++ +S +  + + + + A  TI GASSS     ++VN  FE+W+TTDLLLLGWLYNSM P+V +QLMGF+NV+DLW+A QD F VQ
Subjt:  LEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQ

Query:  SRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        SRAEEDFLRQM QTT+KGN KMEEYL  MK+  D L Q G+P+P R+L+SQVLLGLDE YN VI VIQGK DISWLDM
Subjt:  SRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]6.2e-4657.47Show/hide
Query:  GESQCPTKYLSISTTRESHSSSTDAATTTIDG--ASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAE
        G    P K+LS      + +   +A++   +G  ASSS    +++VNP +E+W+T+D+LLLG +YNSM P+V +QLMGF+  KDLWEAIQ+LF ++SRAE
Subjt:  GESQCPTKYLSISTTRESHSSSTDAATTTIDG--ASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAE

Query:  EDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        E FLR  FQTT++GN KME+YLR MK  AD L Q G+P+P R L+SQVLLGLDE YNPV AVIQGK DISWLDM
Subjt:  EDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]2.8e-4661.74Show/hide
Query:  DAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTM
        + + T I   SSS +     +NP +E W+TTD LLLGWLYNSM PEV  Q+MG+ N  DLW AIQ+LF VQS+AEED+LRQ+FQ T+KG++KM ++LR M
Subjt:  DAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTM

Query:  KSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        KS+AD L Q G+P+PTRSL+SQVLLGLDE YNPV+A IQGK  ISW +M
Subjt:  KSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]3.2e-4258.97Show/hide
Query:  SSSTDAATTTIDGAS---SSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKM
        S+   AA  +I G+S   +S    A  VNP +E W+  D LLLGWLYNSM PEV +Q+MG    KDLW +I  LF VQSR EED+LR +FQTT+KGN+KM
Subjt:  SSSTDAATTTIDGAS---SSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKM

Query:  EEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        EEYL+TMK   D L Q G+P+P R+LVSQVLLGLDE YN ++A+IQG+ D+SWLDM
Subjt:  EEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]3.2e-4258.97Show/hide
Query:  SSSTDAATTTIDGAS---SSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKM
        S+   AA  +I G+S   +S    A  VNP +E W+  D LLLGWLYNSM PEV +Q+MG    KDLW +I  LF VQSR EED+LR +FQTT+KGN+KM
Subjt:  SSSTDAATTTIDGAS---SSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKM

Query:  EEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        EEYL+TMK   D L Q G+P+P R+LVSQVLLGLDE YN ++A+IQG+ D+SWLDM
Subjt:  EEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

TrEMBL top hitse value%identityAlignment
A0A5A7SIT7 Uncharacterized protein9.6e-5363.48Show/hide
Query:  LEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQ
        LE HLTGE+ CP+ ++ +S +  + + + + A  TI GASSS     ++VN  FE+W+TTDLLLLGWLYNSM P+V +QLMGF+NV+DLW+A QD F VQ
Subjt:  LEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQ

Query:  SRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        SRAEEDFLRQM QTT+KGN KMEEYL  MK+  D L Q G+P+P R+L+SQVLLGLDE YN VI VIQGK DISWLDM
Subjt:  SRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

A0A5A7UY76 Integrase, catalytic core5.8e-4259.06Show/hide
Query:  MANATAPLEEHLTG--ESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWE
        MANA + +    T   E+ CP K++ I+   ES S     AT   DGASS      + VNP F++W+T+DLLLLGW+YNSM  EV  QLMGF+  KDL E
Subjt:  MANATAPLEEHLTG--ESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWE

Query:  AIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNP
        AIQDLF VQSR EEDFLR  FQTT+KGN KME+YLR MK+ A+ L Q G+PIP RSL+SQVLLGLDE YNP
Subjt:  AIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNP

A0A5D3BCH9 Uncharacterized protein2.1e-3959.6Show/hide
Query:  LEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQ
        LE HLTGE+ CP+ ++ +S +  + + + + A  TI GASSS     ++VN  FE+W+TTDLLLLGWLYNSM P+V +QLMGF+NV+DLW+A QD F VQ
Subjt:  LEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQ

Query:  SRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQ
        SRAEEDFLRQM QTT+KGN KMEEYL  MK+  D L Q G+P+P R+L+SQ
Subjt:  SRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQ

A0A5D3E3L7 Uncharacterized protein3.0e-4657.47Show/hide
Query:  GESQCPTKYLSISTTRESHSSSTDAATTTIDG--ASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAE
        G    P K+LS      + +   +A++   +G  ASSS    +++VNP +E+W+T+D+LLLG +YNSM P+V +QLMGF+  KDLWEAIQ+LF ++SRAE
Subjt:  GESQCPTKYLSISTTRESHSSSTDAATTTIDG--ASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAE

Query:  EDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        E FLR  FQTT++GN KME+YLR MK  AD L Q G+P+P R L+SQVLLGLDE YNPV AVIQGK DISWLDM
Subjt:  EDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

A0A6J1D5J0 uncharacterized protein LOC1110175011.3e-4661.74Show/hide
Query:  DAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTM
        + + T I   SSS +     +NP +E W+TTD LLLGWLYNSM PEV  Q+MG+ N  DLW AIQ+LF VQS+AEED+LRQ+FQ T+KG++KM ++LR M
Subjt:  DAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTM

Query:  KSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM
        KS+AD L Q G+P+PTRSL+SQVLLGLDE YNPV+A IQGK  ISW +M
Subjt:  KSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)3.5e-0728.12Show/hide
Query:  NPDFEKWITTDLLLLGWLYNSMNP-EVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLV
        N +   W   D ++   LY ++ P +     +  S  +D+W  I++ FR    A    L    +T   G+M++ +Y R MK  AD L     P+  R+LV
Subjt:  NPDFEKWITTDLLLLGWLYNSMNP-EVVVQLMGFSNVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLV

Query:  SQVLLGLDETYNPVIAVIQGKSDISWLD
          VL GL+  ++ +I VI+ +      D
Subjt:  SQVLLGLDETYNPVIAVIQGKSDISWLD

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)2.2e-0928.81Show/hide
Query:  EKWITTDLLLLGWLYNSMNPEVVVQLMGFS-NVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVL
        ++W   D L+  W+Y ++   ++  ++      +DLW ++++LFR    A         +TT   ++ + EY + +KS +D L+   +PI  R LV  +L
Subjt:  EKWITTDLLLLGWLYNSMNPEVVVQLMGFS-NVKDLWEAIQDLFRVQSRAEEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVL

Query:  LGLDETYNPVIAVIQGKS
         GL E Y+ ++ VI+ KS
Subjt:  LGLDETYNPVIAVIQGKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGCCACTGCCCCTCTGGAAGAACACCTCACCGGAGAAAGCCAATGTCCCACTAAGTATCTCTCCATATCTACAACCAGAGAATCACATTCCTCTAGCACAGA
TGCAGCAACTACAACCATAGATGGAGCTTCTTCTTCGCAAGTGAGGATGGCTCAAGTGGTGAATCCTGACTTTGAAAAATGGATCACTACAGATTTACTTTTACTTGGAT
GGTTATATAACTCTATGAACCCAGAAGTAGTCGTGCAATTAATGGGTTTTAGCAATGTAAAGGATCTATGGGAAGCCATACAGGATCTCTTTAGAGTTCAATCAAGGGCC
GAAGAAGATTTCCTACGACAGATGTTTCAGACAACCCAGAAAGGTAATATGAAAATGGAAGAATATCTGAGGACAATGAAGTCGTATGCTGATGGCCTCAGTCAAACTGG
AAATCCTATACCCACGCGATCACTAGTGTCACAAGTTCTTTTGGGACTTGATGAAACATACAATCCTGTCATTGCAGTAATTCAAGGGAAGTCAGATATCTCTTGGCTTG
ATATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGCCACTGCCCCTCTGGAAGAACACCTCACCGGAGAAAGCCAATGTCCCACTAAGTATCTCTCCATATCTACAACCAGAGAATCACATTCCTCTAGCACAGA
TGCAGCAACTACAACCATAGATGGAGCTTCTTCTTCGCAAGTGAGGATGGCTCAAGTGGTGAATCCTGACTTTGAAAAATGGATCACTACAGATTTACTTTTACTTGGAT
GGTTATATAACTCTATGAACCCAGAAGTAGTCGTGCAATTAATGGGTTTTAGCAATGTAAAGGATCTATGGGAAGCCATACAGGATCTCTTTAGAGTTCAATCAAGGGCC
GAAGAAGATTTCCTACGACAGATGTTTCAGACAACCCAGAAAGGTAATATGAAAATGGAAGAATATCTGAGGACAATGAAGTCGTATGCTGATGGCCTCAGTCAAACTGG
AAATCCTATACCCACGCGATCACTAGTGTCACAAGTTCTTTTGGGACTTGATGAAACATACAATCCTGTCATTGCAGTAATTCAAGGGAAGTCAGATATCTCTTGGCTTG
ATATGTAG
Protein sequenceShow/hide protein sequence
MANATAPLEEHLTGESQCPTKYLSISTTRESHSSSTDAATTTIDGASSSQVRMAQVVNPDFEKWITTDLLLLGWLYNSMNPEVVVQLMGFSNVKDLWEAIQDLFRVQSRA
EEDFLRQMFQTTQKGNMKMEEYLRTMKSYADGLSQTGNPIPTRSLVSQVLLGLDETYNPVIAVIQGKSDISWLDM