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PI0017666 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017666
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:14377270..14378032
RNA-Seq ExpressionPI0017666
SyntenyPI0017666
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.6e-3840.18Show/hide
Query:  NRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI-------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKEL
        N NA    A  + N   +AHD +RP+R YA+PNLYNF  GI             KPVM+QM+Q AGQFGG  GEDPH H++SF  IC++F M G+    +
Subjt:  NRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI-------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKEL

Query:  RFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------------------------MRGATQ
        R  LFP +LRDEA++WA + E GE+ TW +++EKFM+K FPP  +A+RR+++++F+QKD E +                               +   +Q
Subjt:  RFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------------------------MRGATQ

Query:  QTADAVFVGGMLKSSYNQIKATLD
          ADA   GG++  +Y Q K  LD
Subjt:  QTADAVFVGGMLKSSYNQIKATLD

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]3.7e-2937.45Show/hide
Query:  MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISP
        M++N  N   P     P  A++  D DR IR YAAP     N GI            KPVM QM+Q  GQF G P EDPH H+R F  I  SF   G+  
Subjt:  MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISP

Query:  KELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------------------------MRG
          LR  LFP ++RD A+ W N+L  G V TW+ L EKF+ K FPP+ NA+ R E+ SFQQ+D E+                                +  
Subjt:  KELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------------------------MRG

Query:  ATQQTADAVFVGGMLKSSYNQIKATLDTMLAITKN
         T+   DA   G +L  SYNQ    L+T+   TKN
Subjt:  ATQQTADAVFVGGMLKSSYNQIKATLDTMLAITKN

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]3.7e-2948.03Show/hide
Query:  AAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTL
        A  E N   +A D  R IR YAAP     N GI            KPVM QM+Q  GQFGG P EDPH HIRSF  +  SF + G+S + LR  LFP +L
Subjt:  AAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTL

Query:  RDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE
        RD A+ W N L    V  W+ L EKF++K FPP  NA+ R E+MSFQQ + E
Subjt:  RDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE

XP_038880527.1 uncharacterized protein LOC120072192 [Benincasa hispida]4.2e-3338.36Show/hide
Query:  MAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWAN
        MA++  RP+R YA+P LY+F+ GI            K VM+QM+Q A QFGG  GEDPH H++ F   C  F +P I+P+++R +LFP +LRD+AK+W +
Subjt:  MAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWAN

Query:  ALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------------------------MRGATQQTADAVFVGGMLKSSYNQ
        +LE  E+ TW++L+EKFM+K FPP  NARRR+E+M+F+Q+D E                                 +  A+Q  ADA    G++  SY +
Subjt:  ALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYM------------------------------MRGATQQTADAVFVGGMLKSSYNQ

Query:  IKATLDTMLAITKNGMKMI
         K   + +L I K+ M+ +
Subjt:  IKATLDTMLAITKNGMKMI

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]1.4e-3147.9Show/hide
Query:  ENNNRNAPP-PQAAQEP--NAAYMAHDLDRPIRSYAAPNLYNFNLG-------------IKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPG
        +NNN  AP   Q    P  +  ++A D + PIR+YAAPNLY+F+ G             IKPVMVQMIQN  QF     E+PH H+  F  +C++F +PG
Subjt:  ENNNRNAPP-PQAAQEP--NAAYMAHDLDRPIRSYAAPNLYNFNLG-------------IKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPG

Query:  ISPKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE
        I+P  +R  LFP TLRD+AKRWA++LE  E+ + DQL+E FMKK FPP  N RRRK +++F++ D E
Subjt:  ISPKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE

TrEMBL top hitse value%identityAlignment
A0A5A7V2U7 Putative disease resistance RPP13-like protein 11.3e-2459.26Show/hide
Query:  NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLG-------------IKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKE
        NN+  P  QAAQ  N  Y+A D DRPIRSYA+PNLY+FN G             IK VM+Q+IQNAGQF  HP +DPH++IR+FY ICASFHMPGIS +E
Subjt:  NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLG-------------IKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKE

Query:  LRFALFPL
        LRF  F L
Subjt:  LRFALFPL

A0A6J1DW02 uncharacterized protein LOC1110248972.3e-2441.61Show/hide
Query:  EPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDE
        E N   MA + D  +R YAA    NF+ GI            KP+M QM+Q  G FGG   EDPH+H++SF  I  +F +PGI+       LFP +L+D+
Subjt:  EPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDE

Query:  AKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE
        A+   NA   G + TW  L+EKF+ K FPP  +A  R+E++SF+Q D+E
Subjt:  AKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE

A0A6J1DY39 uncharacterized protein LOC1110256533.0e-2439.86Show/hide
Query:  PNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEA
        PN  ++A   DR +R YAA  L + N  +            KP+M+QM+ N GQFGG   EDP  H++SF  +  +F +PGIS   LR  LFP ++  +A
Subjt:  PNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEA

Query:  KRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE
          W NA     + TW  +++KF+ K FPP  NA  R+E++SF+QK+ E
Subjt:  KRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKE

A0A6J1H7E4 uncharacterized protein LOC1114611681.7e-2435.53Show/hide
Query:  NNNRNAPPPQAAQE---PNAAYMAHDLDRPIRSYAAPNLYNFN------------LGIKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGIS
        N     P   A QE    NA  +A D +R IR+YA P +   N              +KPVM QM+Q  GQF G P EDPH H++SF  +  SF   G+ 
Subjt:  NNNRNAPPPQAAQE---PNAAYMAHDLDRPIRSYAAPNLYNFN------------LGIKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGIS

Query:  PKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENY---------MMRG--------------------
           +R +LFP +LRD AK W N L    + +W+ L EKF+ K FPP  NAR R E+++FQQ + E           M+R                     
Subjt:  PKELRFALFPLTLRDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENY---------MMRG--------------------

Query:  -ATQQTADAVFVGGMLKSSYNQIKATLD
         AT+Q  DA   G ML  +YN+    L+
Subjt:  -ATQQTADAVFVGGMLKSSYNQIKATLD

U5CUI2 Retrotrans_gag domain-containing protein9.9e-2846.41Show/hide
Query:  AAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTL
        A Q  N   +A D  R IR YAAP     N GI            KPVM QM+Q  GQF G P EDPH H+RSF  +  SF + G+S + LR  LFP +L
Subjt:  AAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGI------------KPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTL

Query:  RDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKEN
        RD A+ W N L    V  W+ L EKF++K FPP  NA+ R E+MSFQQ + E+
Subjt:  RDEAKRWANALEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCGGCACCCAA
CCTCTACAACTTCAACCTAGGGATCAAGCCTGTAATGGTTCAAATGATTCAGAACGCCGGACAATTTGGCGGTCACCCTGGAGAAGATCCACACGAGCACATTAGGAGTT
TCTACTTTATCTGTGCTTCCTTCCATATGCCAGGCATTTCACCTAAAGAACTGAGATTCGCACTCTTCCCATTAACTCTAAGGGACGAGGCGAAGAGGTGGGCCAACGCC
TTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAAGAAATTATTCCCACCTCACGAAAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCA
GCAGAAAGATAAAGAGAACTATATGATGCGTGGAGCTACACAACAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCGACGT
TGGATACAATGCTAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCACCGAGGAGGACGAGGAAGAAGCGATGAAGGTCTGGATAAGAACGTCGTGGTGGCGT
TGTAGGGACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCGGCACCCAA
CCTCTACAACTTCAACCTAGGGATCAAGCCTGTAATGGTTCAAATGATTCAGAACGCCGGACAATTTGGCGGTCACCCTGGAGAAGATCCACACGAGCACATTAGGAGTT
TCTACTTTATCTGTGCTTCCTTCCATATGCCAGGCATTTCACCTAAAGAACTGAGATTCGCACTCTTCCCATTAACTCTAAGGGACGAGGCGAAGAGGTGGGCCAACGCC
TTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAAGAAATTATTCCCACCTCACGAAAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCA
GCAGAAAGATAAAGAGAACTATATGATGCGTGGAGCTACACAACAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCGACGT
TGGATACAATGCTAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCACCGAGGAGGACGAGGAAGAAGCGATGAAGGTCTGGATAAGAACGTCGTGGTGGCGT
TGTAGGGACAAATGA
Protein sequenceShow/hide protein sequence
MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYAAPNLYNFNLGIKPVMVQMIQNAGQFGGHPGEDPHEHIRSFYFICASFHMPGISPKELRFALFPLTLRDEAKRWANA
LEDGEVGTWDQLIEKFMKKLFPPHENARRRKELMSFQQKDKENYMMRGATQQTADAVFVGGMLKSSYNQIKATLDTMLAITKNGMKMISAITEEDEEEAMKVWIRTSWWR
CRDK