CuGenDBv2

Gene ID	PI0017687
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr02:15118670..15119050
RNA-Seq Expression	PI0017687
Synteny	PI0017687
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.7e-34

77.89

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNS++G+GY+SSEP+RITGKGK KVA+TCHIT+EES +SK+ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]

1.7e-34

78.95

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY+SSEPIRITGKGK KV +TCHIT+EES +SK+ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

3.7e-34

79.57

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY+SSEP+RITGKGK KVA+TCHIT+EES +S++ +K
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEK

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]

1.7e-34

78.95

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY+SSEPIRITGKGK KV +TCHIT+EES +SK+ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]

1.3e-34

78.95

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY SSEP+RITGKGKVKVA+TCHIT+EES +S++ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

1.8e-34

79.57

Show/hide

Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY+SSEP+RITGKGK KVA+TCHIT+EES +S++ +K
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEK

A0A5A7U2W9 Gag protease polyprotein

8.0e-35

77.89

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNS++G+GY+SSEP+RITGKGK KVA+TCHIT+EES +SK+ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

A0A5A7V4F2 Reverse transcriptase domain-containing protein

8.0e-35

78.95

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY+SSEPIRITGKGK KV +TCHIT+EES +SK+ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

A0A5D3BTY1 Ribonuclease H

8.0e-35

78.95

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY+SSEPIRITGKGK KV +TCHIT+EES +SK+ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

A0A5D3C783 Ribonuclease H

6.1e-35

78.95

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Query:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK
        GFDPKAYKLMAKAGYDFTTRTELKSVKIFDE+ ELSP QKKL+KQGY  PNSR+G+GY SSEP+RITGKGKVKVA+TCHIT+EES +S++ +K +
Subjt:  GFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCTTCCAGAAAAGCGAACGGTGGAGGGTTTGACCCAAAAGCATATAAGTTGATGGCAAAGGCGGGTTATGACTTTACAACCCGTACTGAGCTTAAAAGCGTGAAGAT
ATTTGATGAAAAGCATGAGCTTTCTCCTATGCAAAAGAAGCTTAAAAAACAAGGATATTTTGGACCTAATTCAAGATCGGGAGTTGGGTATAAGTCTTCCGAGCCGATTC
GAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATGCCACATTACTATTGAAGAAAGCAACAATTCTAAAAAAGACGAAAAAGGGAAAGTCAAAGGAGTTCTGTTT
TTTATTGCATCACCTCTTCTACTGCACATCCTTCAGTTTTCTAGAGGTTGA

mRNA sequence

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Protein sequence

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MPSRKANGGGFDPKAYKLMAKAGYDFTTRTELKSVKIFDEKHELSPMQKKLKKQGYFGPNSRSGVGYKSSEPIRITGKGKVKVADTCHITIEESNNSKKDEKGKVKGVLF
FIASPLLLHILQFSRG

PI0017687 (gene) of Melon (PI 482460) v1 genome