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PI0017703 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017703
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationchr02:13498627..13499525
RNA-Seq ExpressionPI0017703
SyntenyPI0017703
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006281 - DNA repair (biological process)
GO:1990547 - mitochondrial phosphate ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0005315 - inorganic phosphate transmembrane transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052767.1 hypothetical protein E6C27_scaffold43055G00210 [Cucumis melo var. makuwa]2.2e-2069.57Show/hide
Query:  LWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPF
        LW  +      PFCCMLCRKAEEDLDHLFWD  Y +AVWS+FLQ LGV+F GSRS+RA IEEFLLH  F
Subjt:  LWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPF

KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]3.9e-2275.38Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV
        PFCCMLC+KAEEDLDHLF DCQY +AVWS+FLQ+LGV+F GSRS+R TIEEFLLH  F D+ GF+
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV

TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]2.0e-2173.85Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV
        PFCCMLC+KAEEDLDHLF DCQY +AVWS+FLQ+ GV+F GSRS+R TIEEFLLH  F D+ GF+
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV

TYK11201.1 SIL1 [Cucumis melo var. makuwa]5.5e-2447.01Show/hide
Query:  GLRKGLKAHTKIPGRIFPLSFQPTLGSLVVLWGMEEDFT--CRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPP
        G+R       K+P +      Q  LG +  +  + +  T    PF C LC+KA+EDLD+LFWDCQ+ +AVW++FLQE    FVG RS+R TIEEFLLHPP
Subjt:  GLRKGLKAHTKIPGRIFPLSFQPTLGSLVVLWGMEEDFT--CRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPP

Query:  FNDKGGFVWIVGVCAIV
        F +K   +W+ GVCA++
Subjt:  FNDKGGFVWIVGVCAIV

TYK19563.1 uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]1.7e-2061.64Show/hide
Query:  ELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDIWSLARFHVSL
        E  V+  G R +RA  E F+LHPPF +KG F+W+  VCAI+WDIWGERN R+FRGK+R+ S+I SL RFHVSL
Subjt:  ELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDIWSLARFHVSL

TrEMBL top hitse value%identityAlignment
A0A5A7VJE4 zf-RVT domain-containing protein1.9e-2275.38Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV
        PFCCMLC+KAEEDLDHLF DCQY +AVWS+FLQ+LGV+F GSRS+R TIEEFLLH  F D+ GF+
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV

A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X29.5e-2273.85Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV
        PFCCMLC+KAEEDLDHLF DCQY +AVWS+FLQ+ GV+F GSRS+R TIEEFLLH  F D+ GF+
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFV

A0A5D3C1E6 Uncharacterized protein1.0e-2069.57Show/hide
Query:  LWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPF
        LW  +      PFCCMLCRKAEEDLDHLFWD  Y +AVWS+FLQ LGV+F GSRS+RA IEEFLLH  F
Subjt:  LWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPF

A0A5D3CHC7 SIL12.7e-2447.01Show/hide
Query:  GLRKGLKAHTKIPGRIFPLSFQPTLGSLVVLWGMEEDFT--CRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPP
        G+R       K+P +      Q  LG +  +  + +  T    PF C LC+KA+EDLD+LFWDCQ+ +AVW++FLQE    FVG RS+R TIEEFLLHPP
Subjt:  GLRKGLKAHTKIPGRIFPLSFQPTLGSLVVLWGMEEDFT--CRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPP

Query:  FNDKGGFVWIVGVCAIV
        F +K   +W+ GVCA++
Subjt:  FNDKGGFVWIVGVCAIV

A0A5D3D7T2 Uncharacterized protein8.0e-2161.64Show/hide
Query:  ELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDIWSLARFHVSL
        E  V+  G R +RA  E F+LHPPF +KG F+W+  VCAI+WDIWGERN R+FRGK+R+ S+I SL RFHVSL
Subjt:  ELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDIWSLARFHVSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.7e-0529.67Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKER
        P  C+LC   +E   HLF++C +  AVW  F     + F  ++ +   I  +LL+P  +     +  +   A V+ IW ERN  +  G  R
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKER

AT1G45063.1 copper ion binding;electron carriers1.0e-0730.69Show/hide
Query:  VLWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRG
        + WG++      P  C+LC   +E   H+F+DC +   VWS F     V     R  + +   +L HP  + K  F+  +   A V+ IW ERN R+   
Subjt:  VLWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRG

Query:  K
        K
Subjt:  K

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.5e-0625.41Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVC--------------AIVWDIWGERNGRIF
        P  C+ C   +E   HLF+DC++ + VW  F   + V                  PP   + G  W+   C              A V+ IW ERN R+ 
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVC--------------AIVWDIWGERNGRIF

Query:  RGKEREHS----DIWSLARFHV
            R  +    +I S+ R H+
Subjt:  RGKEREHS----DIWSLARFHV

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.1e-0527.08Show/hide
Query:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDI
        P  C+LC   ++   HLF++CQ+   VW  F     +N     +       +LL P        +  +   + V+ IW ERN R+  G  R    I
Subjt:  PFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDI

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.3e-0426.8Show/hide
Query:  WGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSI-RATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIF
        WGM       P   +LC   +E   HLF++C +  A+W  F  +    F  S          ++L  P       +  + + + V+ +W ERN RIF
Subjt:  WGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSI-RATIEEFLLHPPFNDKGGFVWIVGVCAIVWDIWGERNGRIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCCATCCCTTTGAATGGACTTCGAAAAGGGTTAAAGGCACACACCAAAATCCCTGGAAGGATATTTCCTTTGAGCTTCCAACCTACTCTTGGTTCACTCGTTGT
TTTGTGGGGGATGGAAGAGGACTTTACTTGTCGGCCCTTTTGCTGTATGCTTTGTCGGAAGGCGGAGGAAGATCTTGATCATCTTTTCTGGGACTGTCAATACGTGAAGG
CAGTGTGGAGCGCTTTCCTACAAGAGTTGGGTGTCAATTTTGTTGGCTCTAGAAGTATTAGAGCGACGATCGAGGAGTTCCTTCTTCATCCACCCTTTAATGATAAAGGG
GGCTTTGTTTGGATTGTTGGGGTGTGTGCTATTGTTTGGGACATATGGGGCGAGAGGAATGGGAGGATCTTTAGGGGTAAGGAAAGGGAGCATAGTGACATTTGGTCTTT
GGCTAGATTTCATGTTTCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCCATCCCTTTGAATGGACTTCGAAAAGGGTTAAAGGCACACACCAAAATCCCTGGAAGGATATTTCCTTTGAGCTTCCAACCTACTCTTGGTTCACTCGTTGT
TTTGTGGGGGATGGAAGAGGACTTTACTTGTCGGCCCTTTTGCTGTATGCTTTGTCGGAAGGCGGAGGAAGATCTTGATCATCTTTTCTGGGACTGTCAATACGTGAAGG
CAGTGTGGAGCGCTTTCCTACAAGAGTTGGGTGTCAATTTTGTTGGCTCTAGAAGTATTAGAGCGACGATCGAGGAGTTCCTTCTTCATCCACCCTTTAATGATAAAGGG
GGCTTTGTTTGGATTGTTGGGGTGTGTGCTATTGTTTGGGACATATGGGGCGAGAGGAATGGGAGGATCTTTAGGGGTAAGGAAAGGGAGCATAGTGACATTTGGTCTTT
GGCTAGATTTCATGTTTCTCTTTAG
Protein sequenceShow/hide protein sequence
MAPIPLNGLRKGLKAHTKIPGRIFPLSFQPTLGSLVVLWGMEEDFTCRPFCCMLCRKAEEDLDHLFWDCQYVKAVWSAFLQELGVNFVGSRSIRATIEEFLLHPPFNDKG
GFVWIVGVCAIVWDIWGERNGRIFRGKEREHSDIWSLARFHVSL