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PI0017714 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017714
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr05:15890855..15891106
RNA-Seq ExpressionPI0017714
SyntenyPI0017714
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-2982.5Show/hide
Query:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS
        GSSSKT++GPS IKKK KGKT KNSKGKKVAKGKCYHCN+  HWLRNCPKYLAEKKAEKEA GKYDLL ++ CL+EYDTS
Subjt:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-3081.93Show/hide
Query:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST
        +RGSSSKT++GPS IKKK KGK  KNSKGKKVAKGKCYHCN++RHWL+NC KYLAEKKAEKEA GKYDLL V+ CLVEYDTST
Subjt:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST

KAA0056018.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2878.31Show/hide
Query:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST
        +RGSSSKT++GPS +KKK  GKTLKN+KGKKVAKGKCYH N++ HWLRNC KYL EKKAEKEA GKYDLL V+ CLVEYDTST
Subjt:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST

TYK27705.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2878.31Show/hide
Query:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST
        +RGSSSKT++GPS +KKK  GKTLKN+KGKKVAKGKCYH N++ HWLRNC KYL EKKAEKEA GKYDLL V+ CLVEYDTST
Subjt:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-2981.25Show/hide
Query:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS
        GSSSKT++GPS IKKK KGKT KNSKGKKVAKGKCYHCN++ HWLRNCP+YLAEKKAEKEA GKYDLL ++ CL+EYDTS
Subjt:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein8.7e-3082.5Show/hide
Query:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS
        GSSSKT++GPS IKKK KGKT KNSKGKKVAKGKCYHCN+  HWLRNCPKYLAEKKAEKEA GKYDLL ++ CL+EYDTS
Subjt:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS

A0A5A7TUI5 Gag/pol protein1.3e-3081.93Show/hide
Query:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST
        +RGSSSKT++GPS IKKK KGK  KNSKGKKVAKGKCYHCN++RHWL+NC KYLAEKKAEKEA GKYDLL V+ CLVEYDTST
Subjt:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST

A0A5A7ULR1 Gag/pol protein9.6e-2978.31Show/hide
Query:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST
        +RGSSSKT++GPS +KKK  GKTLKN+KGKKVAKGKCYH N++ HWLRNC KYL EKKAEKEA GKYDLL V+ CLVEYDTST
Subjt:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST

A0A5D3DWL6 Gag/pol protein9.6e-2978.31Show/hide
Query:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST
        +RGSSSKT++GPS +KKK  GKTLKN+KGKKVAKGKCYH N++ HWLRNC KYL EKKAEKEA GKYDLL V+ CLVEYDTST
Subjt:  MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST

A0A5D3E1U5 Gag/pol protein1.9e-2981.25Show/hide
Query:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS
        GSSSKT++GPS IKKK KGKT KNSKGKKVAKGKCYHCN++ HWLRNCP+YLAEKKAEKEA GKYDLL ++ CL+EYDTS
Subjt:  GSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGATCGTCCTCTAAAACTAAAATTGGGCCTTCACTAATTAAGAAGAAGGAAAAAGGGAAGACTCTCAAGAATAGCAAGGGAAAGAAAGTTGCGAAAGGTAAATG
TTATCATTGCAATCAGAACAGGCATTGGTTGAGGAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACATGGTAAATATGATTTACTAACTGTTAAAA
TGTGCTTAGTGGAATATGATACTTCAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGATCGTCCTCTAAAACTAAAATTGGGCCTTCACTAATTAAGAAGAAGGAAAAAGGGAAGACTCTCAAGAATAGCAAGGGAAAGAAAGTTGCGAAAGGTAAATG
TTATCATTGCAATCAGAACAGGCATTGGTTGAGGAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACATGGTAAATATGATTTACTAACTGTTAAAA
TGTGCTTAGTGGAATATGATACTTCAACCTGA
Protein sequenceShow/hide protein sequence
MRGSSSKTKIGPSLIKKKEKGKTLKNSKGKKVAKGKCYHCNQNRHWLRNCPKYLAEKKAEKEAHGKYDLLTVKMCLVEYDTST