CuGenDBv2

Gene ID	PI0017720
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Mitochondrial transcription termination factor family protein
Genome location	chr08:19301121..19301792
RNA-Seq Expression	PI0017720
Synteny	PI0017720
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domains	IPR003690 - Transcription termination factor, mitochondrial/chloroplastic IPR038538 - MTERF superfamily, mitochondrial/chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

TYK12925.1 Mitochondrial transcription termination factor family protein [Cucumis melo var. makuwa]

1.6e-54

72.57

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL YPTLIPRTSFN+EKMEFIQKTG                        QKVANL+KFGFTEDE FALIRR PLILTLSV KVQRN+TFIL +MELPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        VVL YPFLLRFNLEA          EM LHLQIKGRSI+SALRMPE RFLKKFVYSQPQDVADELMQFYQ AKAI
Subjt:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

XP_008440198.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis melo]

1.6e-54

72.57

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL YPTLIPRTSFN+EKMEFIQKTG                        QKVANL+KFGFTEDE FALIRR PLILTLSV KVQRN+TFIL +MELPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        VVL YPFLLRFNLEA          EM LHLQIKGRSI+SALRMPE RFLKKFVYSQPQDVADELMQFYQ AKAI
Subjt:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

XP_022158121.1 uncharacterized protein LOC111024679 [Momordica charantia]

5.6e-47

62.36

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        ML+  PTLIPR+SFNDEK+E+IQKTG                        QKVANLEKFGFT+DE FAL+ RSPLILTLSV KVQRN+TFILCT++LPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        V+L+YPFLL FNLEA             EM LHLQIKGR+++ ALRM EKRFLK FV SQP+ VADELM+FYQSAK +
Subjt:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

XP_022978595.1 uncharacterized protein LOC111478530 isoform X2 [Cucurbita maxima]

6.2e-46

61.8

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL  PTLIPR+SFNDEKM +IQKTG                        QKVANLEKFGFTEDETF L+ RSPLILTLSV KVQRN+TFILCT+ LPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLE-------------AEMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        ++L+YPFL+  NLE              EM LH+QIKG  ++ ALRM EKRFLK+FV SQP+DVADELMQFYQSAK I
Subjt:  VVLDYPFLLRFNLE-------------AEMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

XP_038881817.1 uncharacterized protein LOC120073205, partial [Benincasa hispida]

1.0e-48

63.48

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        ML+  PTLIPRTSFNDEKME+IQKTG                         KVANLEKFGFTEDE FAL+ RSPLILTLSV KVQRN+TFILCT++LPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        V+L+YPFLL FNL+A             EM LH+QIKG  ++ ALRM EKRFLKKF+YSQP+DVADELMQFYQ AK I
Subjt:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B056 LOW QUALITY PROTEIN: uncharacterized protein LOC103484733

7.9e-55

72.57

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL YPTLIPRTSFN+EKMEFIQKTG                        QKVANL+KFGFTEDE FALIRR PLILTLSV KVQRN+TFIL +MELPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        VVL YPFLLRFNLEA          EM LHLQIKGRSI+SALRMPE RFLKKFVYSQPQDVADELMQFYQ AKAI
Subjt:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

A0A5D3CMY9 Mitochondrial transcription termination factor family protein

7.9e-55

72.57

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL YPTLIPRTSFN+EKMEFIQKTG                        QKVANL+KFGFTEDE FALIRR PLILTLSV KVQRN+TFIL +MELPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        VVL YPFLLRFNLEA          EM LHLQIKGRSI+SALRMPE RFLKKFVYSQPQDVADELMQFYQ AKAI
Subjt:  VVLDYPFLLRFNLEA----------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

A0A6J1E035 uncharacterized protein LOC111024679

2.7e-47

62.36

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        ML+  PTLIPR+SFNDEK+E+IQKTG                        QKVANLEKFGFT+DE FAL+ RSPLILTLSV KVQRN+TFILCT++LPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        V+L+YPFLL FNLEA             EM LHLQIKGR+++ ALRM EKRFLK FV SQP+ VADELM+FYQSAK +
Subjt:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

A0A6J1IQK9 uncharacterized protein LOC111478530 isoform X2

3.0e-46

61.8

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL  PTLIPR+SFNDEKM +IQKTG                        QKVANLEKFGFTEDETF L+ RSPLILTLSV KVQRN+TFILCT+ LPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLE-------------AEMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        ++L+YPFL+  NLE              EM LH+QIKG  ++ ALRM EKRFLK+FV SQP+DVADELMQFYQSAK I
Subjt:  VVLDYPFLLRFNLE-------------AEMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

A0A6J1IUG6 uncharacterized protein LOC111478530 isoform X1

3.0e-46

61.8

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        MLL  PTLIPR+SFNDEKM +IQKTG                        QKVANLEKFGFTEDETF L+ RSPLILTLSV KVQRN+TFILCT+ LPAK
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLE-------------AEMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI
        ++L+YPFL+  NLE              EM LH+QIKG  ++ ALRM EKRFLK+FV SQP+DVADELMQFYQSAK I
Subjt:  VVLDYPFLLRFNLE-------------AEMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAKAI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G79220.1 Mitochondrial transcription termination factor family protein

3.2e-32

45.45

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Query:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK
        ML+  PTLIPRT+FN+EK E+I+KTG                        +KV NLEKFGF+E+E + L  + P++L+LSV KVQRN+TF++ +M+LPA 
Subjt:  MLLCYPTLIPRTSFNDEKMEFIQKTG------------------------QKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAK

Query:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAK
         V+ +P LL  NLE+             EM L   IK  SI  A+RM EKRFLK +V   PQD+A ELM+FY+ +K
Subjt:  VVLDYPFLLRFNLEA-------------EMSLHLQIKGRSIISALRMPEKRFLKKFVYSQPQDVADELMQFYQSAK

AT5G64950.1 Mitochondrial transcription termination factor family protein

6.7e-06

28.45

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Query:  GFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAKVVLDYPFLLRFNLEAEMSLHLQI---------------KGRSIISALRMPEKRFLKKFV
        GF+EDE   +IRRSP ++  S  K+     F L  M L  + +   P +L +NLE  +   L++               K ++++  + M E+ FL+K+V
Subjt:  GFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAKVVLDYPFLLRFNLEAEMSLHLQI---------------KGRSIISALRMPEKRFLKKFV

Query:  YSQPQDVADELMQFYQ
             ++A+EL+  Y+
Subjt:  YSQPQDVADELMQFYQ

Sequences

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CDS sequence

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ATGCTTCTATGTTACCCCACATTGATTCCAAGAACTTCATTTAATGATGAGAAGATGGAATTCATACAAAAAACAGGTCAAAAAGTAGCCAATTTGGAGAAGTTTGGTTT
CACAGAAGATGAGACATTTGCTCTGATTCGACGATCTCCCCTTATCTTGACTCTATCAGTCGTTAAAGTGCAAAGGAACGTGACTTTCATCTTGTGCACGATGGAGTTAC
CTGCTAAAGTGGTTCTTGACTATCCATTTCTATTACGTTTTAACCTGGAAGCTGAAATGAGTCTCCATCTGCAGATCAAAGGTCGTTCAATTATTAGTGCCCTTAGGATG
CCAGAGAAGAGATTCTTGAAGAAATTTGTTTACAGTCAACCACAAGATGTTGCTGATGAGTTGATGCAGTTCTATCAAAGTGCCAAAGCCATAAGTGTTTGGCAGAAACC
TCGAGGAAGAACGGTAATAGCCGATTTCCTTTCTGAAGCTTATGCTCCTTTTACATTTTTTAAGAGATATCTGGCCTGGAGGTTTGACCAACTTTATGGCATAGTATGTT
TTGAATATTGA

mRNA sequence

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Protein sequence

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MLLCYPTLIPRTSFNDEKMEFIQKTGQKVANLEKFGFTEDETFALIRRSPLILTLSVVKVQRNVTFILCTMELPAKVVLDYPFLLRFNLEAEMSLHLQIKGRSIISALRM
PEKRFLKKFVYSQPQDVADELMQFYQSAKAISVWQKPRGRTVIADFLSEAYAPFTFFKRYLAWRFDQLYGIVCFEY

PI0017720 (gene) of Melon (PI 482460) v1 genome