CuGenDBv2

Gene ID	PI0017733
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	CCHC-type domain-containing protein
Genome location	chr04:21034895..21035194
RNA-Seq Expression	PI0017733
Synteny	PI0017733
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035842.1 uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa]

1.8e-28

76.77

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+T KEV DALQKKYDIE+VGSKKY VS+YL+YQM D+KSVEAQS E+QKI  EIISEGM L+++FQV VIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

KAA0042384.1 pol polyprotein [Cucumis melo var. makuwa]

9.0e-28

71.72

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+T KEV DALQKKYD E+ GSKKY V++YL+Y+M D+KS+EAQS E+QKI  EIISEGM L+++FQV VIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]

6.2e-29

74.75

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+T KEV DALQKKYD E+ GSKKY VS+YL+YQM D+KSVEAQS E+QKI  EIISEGM L+++FQV VIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

XP_038883500.1 uncharacterized protein LOC120074448 isoform X1 [Benincasa hispida]

9.0e-28

73.74

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M T KEV DALQKKYD E+  SKKY VS YL++QM D KSVEAQS ELQKI  EII+EGM L+E+FQ+AVIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

XP_038883503.1 uncharacterized protein LOC120074448 isoform X4 [Benincasa hispida]

9.0e-28

73.74

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M T KEV DALQKKYD E+  SKKY VS YL++QM D KSVEAQS ELQKI  EII+EGM L+E+FQ+AVIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

TrEMBL top hits

e value

%identity

Alignment

A0A2P5FP19 Zinc finger, CCHC-type (Fragment)

8.2e-27

71.13

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Query:  TTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKID-EIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        + KE+ DALQKKYD E+ G+KKY VS+YL+YQM D+KSVE QS ELQ I  EIISEGMSL+E+FQVAV+IDKLPP  K+F+++LRHKTKEFSL+SLI
Subjt:  TTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKID-EIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

A0A5A7SXC2 Uncharacterized protein

8.8e-29

76.77

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+T KEV DALQKKYDIE+VGSKKY VS+YL+YQM D+KSVEAQS E+QKI  EIISEGM L+++FQV VIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

A0A5A7TG34 Pol polyprotein

4.4e-28

71.72

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+T KEV DALQKKYD E+ GSKKY V++YL+Y+M D+KS+EAQS E+QKI  EIISEGM L+++FQV VIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

A0A5A7UYY4 Uncharacterized protein

3.0e-29

74.75

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+T KEV DALQKKYD E+ GSKKY VS+YL+YQM D+KSVEAQS E+QKI  EIISEGM L+++FQV VIIDKLPPL K+F+N LRHKTKEFSL+SLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

A0A5D3BGA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.4e-28

72.73

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Query:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI
        M+TTKEV DALQKKYD E+ GSKKY VS+YL+YQM D+K  E QS ++QKI  EIISEGM L+++FQVAVIIDKLPPL K+F+N LRHK KEFSLKSLI
Subjt:  MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

9.3e-07

37.18

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Query:  KEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNF
        KE+ D L+  Y  ++  SK+  V +Y++++M++ + +  Q Q   KI D I+S GM L+E F V+ II K PP  + F
Subjt:  KEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKI-DEIISEGMSLNEEFQVAVIIDKLPPLLKNF

Sequences

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CDS sequence

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ATGTCCACTACGAAAGAAGTTTTGGATGCACTGCAAAAGAAGTATGACATCGAAAAAGTTGGATCCAAGAAATATACGGTGAGTCAGTACTTACAGTACCAGATGATTGA
CAACAAATCAGTGGAGGCTCAATCACAAGAGTTGCAGAAAATTGACGAAATAATTAGCGAAGGTATGTCACTCAATGAGGAGTTTCAAGTTGCTGTTATTATCGATAAGT
TACCTCCACTATTGAAGAATTTCAGAAATCTTCTAAGGCATAAGACAAAAGAGTTCTCCCTGAAGAGTCTGATCATCTGA

mRNA sequence

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Protein sequence

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MSTTKEVLDALQKKYDIEKVGSKKYTVSQYLQYQMIDNKSVEAQSQELQKIDEIISEGMSLNEEFQVAVIIDKLPPLLKNFRNLLRHKTKEFSLKSLII

PI0017733 (gene) of Melon (PI 482460) v1 genome