CuGenDBv2

Gene ID	PI0017795
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribosome biogenesis protein
Genome location	chr08:1758822..1762373
RNA-Seq Expression	PI0017795
Synteny	PI0017795
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

4.4e-69

93.67

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Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLS+FLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EE KKKK NKNGSKKRKEKK KA ARPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

5.4e-67

93.46

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Query:  SRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLS+FLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQP+EE KKKK NKNGSKKRKEKKSKALARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

8.8e-70

93.67

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Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKRDLKAFDLSTLS+FLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP+EE KKKK NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]

1.5e-64

88.61

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Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD+KSKAERKFEKKVQFYERVGETI+TLNAQKTI+KKK++RRRKRDLKAFDLS LS+FLPGL APKQKPSAAE KLNCKSRLKF+LKERKQM 
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHPVFQADPLRA++LHLEGTQP+EE KKKK NKNGSKKRKEKKS A ARPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

3.6e-71

93.63

Show/hide

Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD+KSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK+HRRRKRDLKAFDLSTLS+FLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKKNKNGSKKRKEKKSKALARPSSMEM
        TVLNHPVFQADPLRA+QLHLEGTQP+EE KKK NKNGSKKRKEKKSKA  RPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKKNKNGSKKRKEKKSKALARPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

4.3e-70

93.67

Show/hide

Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKRDLKAFDLSTLS+FLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP+EE KKKK NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like

2.6e-67

93.46

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Query:  SRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLS+FLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        PVFQADPLRAVQLHLEGTQP+EE KKKK NKNGSKKRKEKKSKALARPSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

2.1e-69

93.67

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Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLS+FLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EE KKKK NKNGSKKRKEKK KA ARPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

1.8e-60

82.91

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Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD+KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKRDLKAFDL+ LS+FLPGL+APKQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHP FQADPL A+ LHL+ TQP+EE KKKK N+NGSKKRKEKKSKA A+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like

2.4e-60

82.91

Show/hide

Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD+KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKRDLKAFDL+ LS+FLPGL+ PKQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM
        TVLNHP FQADPL A+ LHLE TQP+EE KKKK N+NGSKKRKEKKSKA A+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPLEELKKKK-NKNGSKKRKEKKSKALARPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

3.3e-30

Show/hide

Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEA-PKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+  +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R++ LKA+DL+ LS+FLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEA-PKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQP--LEELKKKKNKNGSKKRKEKKSK
          VL+HP FQADP+ ++  HL   QP   E+ KKK N NGSKKR +KK K
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQP--LEELKKKKNKNGSKKRKEKKSK

AT2G01640.2 unknown protein

3.3e-30

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Query:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEA-PKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+  +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R++ LKA+DL+ LS+FLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEA-PKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQP--LEELKKKKNKNGSKKRKEKKSK
          VL+HP FQADP+ ++  HL   QP   E+ KKK N NGSKKR +KK K
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQP--LEELKKKKNKNGSKKRKEKKSK

Sequences

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CDS sequence

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ATGGGCAAACCAGTCTCCCGGTCGGATGCAAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTGAATGC
TCAAAAGACTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGACTTTCTTCCTGGATTGGAGGCGCCAAAAC
AAAAACCTTCCGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCA
GACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCACTCGAGGAGCTGAAGAAAAAGAAGAATAAAAATGGGAGCAAGAAAAGAAAAGAGAAGAAGTCGAA
AGCCTTGGCAAGACCTTCATCTATGGAGATGTGA

mRNA sequence

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Protein sequence

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MGKPVSRSDAKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSDFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQA
DPLRAVQLHLEGTQPLEELKKKKNKNGSKKRKEKKSKALARPSSMEM

PI0017795 (gene) of Melon (PI 482460) v1 genome