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PI0017796 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017796
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:13816829..13817502
RNA-Seq ExpressionPI0017796
SyntenyPI0017796
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-4762.2Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ +++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCI+AEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AETFA
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-4759.15Show/hide
Query:  MIVKRMPGHNITVSTIDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNWSNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFADVE
        M+  ++PG NI  STID +IK MKR+F A+ EMRG  CSGFGWNDE KCI+AEK+++D+WS+ A KGLLNK F HYD+L YVFG+DRATGGRAE+FAD+ 
Subjt:  MIVKRMPGHNITVSTIDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNWSNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFADVE

Query:  SNVPAGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSKG---SSGSKRKRGEQAFEA
        SN P GY    A    + +FP MYS GL+MSPDD+M TR  ++S+    SSGSKRKR   A ++
Subjt:  SNVPAGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSKG---SSGSKRKRGEQAFEA

KAA0058882.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-4762.2Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ K++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCI+AEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AET+A
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-4762.8Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ +++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCIIAEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AETFA
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-4762.2Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ +++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCI+AEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AETFA
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein2.2e-4762.2Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ +++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCI+AEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AETFA
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

A0A5A7USM3 Retrotransposon protein1.7e-4762.2Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ K++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCI+AEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AET+A
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

A0A5A7VES2 Retrotransposon protein1.7e-4762.8Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ +++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCIIAEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AETFA
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

A0A5D3DCZ1 Retrotransposon protein2.2e-4762.2Show/hide
Query:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA
        M+ +++PG  +  +T IDC+IKT+KR FQAI EMRG  CSGFGWNDE KCI+AEK+L+DNW  S+ A KGLLNKPFP+YD+L YVFGRDRATG  AETFA
Subjt:  MIVKRMPGHNITVST-IDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNW--SNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFA

Query:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ
        DV SN P  GY  F   + NE +FP +YSQG+D+S DD+  +RP + S+   GSSGSKRKRG Q
Subjt:  DVESNVP-AGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSK---GSSGSKRKRGEQ

A0A5D3DPR5 Retrotransposon protein2.2e-4759.15Show/hide
Query:  MIVKRMPGHNITVSTIDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNWSNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFADVE
        M+  ++PG NI  STID +IK MKR+F A+ EMRG  CSGFGWNDE KCI+AEK+++D+WS+ A KGLLNK F HYD+L YVFG+DRATGGRAE+FAD+ 
Subjt:  MIVKRMPGHNITVSTIDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNWSNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFADVE

Query:  SNVPAGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSKG---SSGSKRKRGEQAFEA
        SN P GY    A    + +FP MYS GL+MSPDD+M TR  ++S+    SSGSKRKR   A ++
Subjt:  SNVPAGYGGFPAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSKG---SSGSKRKRGEQAFEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTCAAGAGGATGCCAGGACATAACATAACAGTTTCGACCATAGATTGTCAAATAAAGACTATGAAAAGAGTGTTCCAAGCCATATTTGAAATGAGGGGCTCGAT
GTGCAGTGGGTTCGGTTGGAATGATGAGCTCAAATGCATTATTGCCGAGAAAGACTTGTACGACAATTGGAGTAATCTAGCCACGAAAGGCCTCCTAAACAAACCCTTTC
CCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCGATGTTGAGTCGAACGTGCCTGCAGGGTACGGTGGATTT
CCCGCTCATGAAAAGAACGAAGTGGAGTTCCCCACAATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGCACACGACCCGATCAGTTGTCTAAGGGTTC
TAGCGGTTCAAAGAGGAAACGAGGAGAGCAGGCCTTCGAGGCGGCAGCTGAATGTCATTGCAGAATATGCGAACGATCAGCTGAAAGCCATTGCAGAATGGCCCAAAGAA
CAACGCCAAGATGCAAGCGTGACACGTGCAGAAGTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGTCAAGAGGATGCCAGGACATAACATAACAGTTTCGACCATAGATTGTCAAATAAAGACTATGAAAAGAGTGTTCCAAGCCATATTTGAAATGAGGGGCTCGAT
GTGCAGTGGGTTCGGTTGGAATGATGAGCTCAAATGCATTATTGCCGAGAAAGACTTGTACGACAATTGGAGTAATCTAGCCACGAAAGGCCTCCTAAACAAACCCTTTC
CCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCGATGTTGAGTCGAACGTGCCTGCAGGGTACGGTGGATTT
CCCGCTCATGAAAAGAACGAAGTGGAGTTCCCCACAATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGCACACGACCCGATCAGTTGTCTAAGGGTTC
TAGCGGTTCAAAGAGGAAACGAGGAGAGCAGGCCTTCGAGGCGGCAGCTGAATGTCATTGCAGAATATGCGAACGATCAGCTGAAAGCCATTGCAGAATGGCCCAAAGAA
CAACGCCAAGATGCAAGCGTGACACGTGCAGAAGTCGTTAA
Protein sequenceShow/hide protein sequence
MIVKRMPGHNITVSTIDCQIKTMKRVFQAIFEMRGSMCSGFGWNDELKCIIAEKDLYDNWSNLATKGLLNKPFPHYDDLCYVFGRDRATGGRAETFADVESNVPAGYGGF
PAHEKNEVEFPTMYSQGLDMSPDDIMGTRPDQLSKGSSGSKRKRGEQAFEAAAECHCRICERSAESHCRMAQRTTPRCKRDTCRSR