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PI0017811 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017811
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr09:7861947..7862793
RNA-Seq ExpressionPI0017811
SyntenyPI0017811
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036791.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4347.32Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL-----------------------------------------------------SHPAAKGLLNKPFPHYDDLC
        M +SSR PKH WTKEE+A LVECLVEL                                                     SHPAAKGLLNK F HYD+L 
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL-----------------------------------------------------SHPAAKGLLNKPFPHYDDLC

Query:  YVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLK
        YVF +DR+T GR E F D+GSN PAGYD F A    D +FP+MYSQGL+MSPD++MGTR +R SE R  SS SKRK+     ++  I+R+A+EY N+QL 
Subjt:  YVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLK

Query:  AIAEWPKEQCQDASVTCVKVVKQL
         IAEWP  Q QDAS T  ++++QL
Subjt:  AIAEWPKEQCQDASVTCVKVVKQL

KAA0041235.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-4145.81Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL--------------------------------------------------------SHPAAKGLLNKPFPHYD
        M +SSR PKH WTKEE+A+LVECLVEL                                                        SHPAAKGLLNK F HYD
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL--------------------------------------------------------SHPAAKGLLNKPFPHYD

Query:  DLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYAND
         L YVF +DRAT GRAE F D+GSN P GYD F A    D  F  MYS GL+MSPD++M TR +R SE +  SSGSKRK+     ++ +I+R+A+EY N+
Subjt:  DLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYAND

Query:  QLKAIAEWPKEQCQDASVTCVKVVKQL
        QL  IAEWP  Q QDA+ T  ++V+QL
Subjt:  QLKAIAEWPKEQCQDASVTCVKVVKQL

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-4348Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL------------------------------------------------------SHPAAKGLLNKPFPHYDDL
        M +SSR PKH WTKEE+A LVECLVEL                                                      SHPAAKGLLNK F HYD+L
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL------------------------------------------------------SHPAAKGLLNKPFPHYDDL

Query:  CYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQL
         YVF +DRAT GRAE F D+GSN PAGYD F A D +D +F  MYS GL+MSPD++M TR +R SE R  SSGSKRK+     ++ +I+R+AMEY N+QL
Subjt:  CYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQL

Query:  KAIAEWPKEQCQDASVTCVKVVKQL
          IAEWP  Q QDA+ T  ++V+QL
Subjt:  KAIAEWPKEQCQDASVTCVKVVKQL

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4462.75Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVELSHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPD
        MATSS APKH WTKEE  TLVECLVELSHPAAKGL NKPFP+YD+L YVF  DR   G  + F DVGSN P  Y  F   DGN+ EFP+MYSQG+DMS +
Subjt:  MATSSRAPKHHWTKEEDATLVECLVELSHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPD

Query:  NIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP
        ++  +RPS  S+GR  SSGSKRK+E Q    +E+I  A+E  NDQL+ IAEWP
Subjt:  NIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP

KAA0062548.1 retrotransposon protein [Cucumis melo var. makuwa]5.0e-4253.48Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL---------------------------------SHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVG
        M+TS+RAP+H WTK+E+ TLVECL+EL                                 SHPAAKGLLNKPFP+YD+L YVF RDRAT   AE F DVG
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL---------------------------------SHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVG

Query:  SNVPA-GYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP
        SN P  GYD F   DGN+ +FP MYSQG+D+S D++  +RPSRA EGR GSSGSKRK+E Q    VE I  A++  N+QL+ IAEWP
Subjt:  SNVPA-GYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP

TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein5.7e-4448Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL------------------------------------------------------SHPAAKGLLNKPFPHYDDL
        M +SSR PKH WTKEE+A LVECLVEL                                                      SHPAAKGLLNK F HYD+L
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL------------------------------------------------------SHPAAKGLLNKPFPHYDDL

Query:  CYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQL
         YVF +DRAT GRAE F D+GSN PAGYD F A D +D +F  MYS GL+MSPD++M TR +R SE R  SSGSKRK+     ++ +I+R+AMEY N+QL
Subjt:  CYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQL

Query:  KAIAEWPKEQCQDASVTCVKVVKQL
          IAEWP  Q QDA+ T  ++V+QL
Subjt:  KAIAEWPKEQCQDASVTCVKVVKQL

A0A5A7U4I8 Retrotransposon protein8.9e-4562.75Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVELSHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPD
        MATSS APKH WTKEE  TLVECLVELSHPAAKGL NKPFP+YD+L YVF  DR   G  + F DVGSN P  Y  F   DGN+ EFP+MYSQG+DMS +
Subjt:  MATSSRAPKHHWTKEEDATLVECLVELSHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPD

Query:  NIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP
        ++  +RPS  S+GR  SSGSKRK+E Q    +E+I  A+E  NDQL+ IAEWP
Subjt:  NIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP

A0A5A7V4P8 Retrotransposon protein2.4e-4253.48Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL---------------------------------SHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVG
        M+TS+RAP+H WTK+E+ TLVECL+EL                                 SHPAAKGLLNKPFP+YD+L YVF RDRAT   AE F DVG
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL---------------------------------SHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVG

Query:  SNVPA-GYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP
        SN P  GYD F   DGN+ +FP MYSQG+D+S D++  +RPSRA EGR GSSGSKRK+E Q    VE I  A++  N+QL+ IAEWP
Subjt:  SNVPA-GYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWP

A0A5D3BC43 Retrotransposon protein9.8e-4447.32Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL-----------------------------------------------------SHPAAKGLLNKPFPHYDDLC
        M +SSR PKH WTKEE+A LVECLVEL                                                     SHPAAKGLLNK F HYD+L 
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL-----------------------------------------------------SHPAAKGLLNKPFPHYDDLC

Query:  YVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLK
        YVF +DR+T GR E F D+GSN PAGYD F A    D +FP+MYSQGL+MSPD++MGTR +R SE R  SS SKRK+     ++  I+R+A+EY N+QL 
Subjt:  YVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLK

Query:  AIAEWPKEQCQDASVTCVKVVKQL
         IAEWP  Q QDAS T  ++++QL
Subjt:  AIAEWPKEQCQDASVTCVKVVKQL

A0A5D3D058 Retrotransposon protein7.0e-4245.81Show/hide
Query:  MATSSRAPKHHWTKEEDATLVECLVEL--------------------------------------------------------SHPAAKGLLNKPFPHYD
        M +SSR PKH WTKEE+A+LVECLVEL                                                        SHPAAKGLLNK F HYD
Subjt:  MATSSRAPKHHWTKEEDATLVECLVEL--------------------------------------------------------SHPAAKGLLNKPFPHYD

Query:  DLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYAND
         L YVF +DRAT GRAE F D+GSN P GYD F A    D  F  MYS GL+MSPD++M TR +R SE +  SSGSKRK+     ++ +I+R+A+EY N+
Subjt:  DLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRASEGRAGSSGSKRKQERQTFEAVEIIRSAMEYAND

Query:  QLKAIAEWPKEQCQDASVTCVKVVKQL
        QL  IAEWP  Q QDA+ T  ++V+QL
Subjt:  QLKAIAEWPKEQCQDASVTCVKVVKQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTTCTTCGAGGGCCCCAAAGCACCACTGGACAAAAGAAGAGGATGCCACCCTCGTTGAATGTCTTGTGGAATTGAGTCATCCAGCCGCAAAGGGCCTCTTAAA
CAAACCCTTTCCCCATTACGACGACCTCTGCTACGTCTTTGAAAGAGATCGTGCGACAAGAGGTCGCGCTGAAATTTTTGTGGATGTTGGGTCGAACGTGCCTGCAGGGT
ACGATGGATTTCCCGCTTATGACGGGAACGATGTGGAGTTCCCCACGATGTACAGTCAGGGACTGGACATGTCACCTGATAACATAATGGGCACACGACCCAGTCGAGCG
TCTGAGGGAAGGGCGGGTTCCAGCGGTTCAAAGAGGAAACAAGAAAGACAGACGTTCGAGGCAGTAGAAATTATTCGCAGTGCCATGGAATATGCGAACGACCAGCTGAA
GGCCATAGCAGAATGGCCCAAAGAACAATGCCAAGATGCAAGCGTGACATGTGTGAAAGTCGTTAAACAACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTTCTTCGAGGGCCCCAAAGCACCACTGGACAAAAGAAGAGGATGCCACCCTCGTTGAATGTCTTGTGGAATTGAGTCATCCAGCCGCAAAGGGCCTCTTAAA
CAAACCCTTTCCCCATTACGACGACCTCTGCTACGTCTTTGAAAGAGATCGTGCGACAAGAGGTCGCGCTGAAATTTTTGTGGATGTTGGGTCGAACGTGCCTGCAGGGT
ACGATGGATTTCCCGCTTATGACGGGAACGATGTGGAGTTCCCCACGATGTACAGTCAGGGACTGGACATGTCACCTGATAACATAATGGGCACACGACCCAGTCGAGCG
TCTGAGGGAAGGGCGGGTTCCAGCGGTTCAAAGAGGAAACAAGAAAGACAGACGTTCGAGGCAGTAGAAATTATTCGCAGTGCCATGGAATATGCGAACGACCAGCTGAA
GGCCATAGCAGAATGGCCCAAAGAACAATGCCAAGATGCAAGCGTGACATGTGTGAAAGTCGTTAAACAACTGTAG
Protein sequenceShow/hide protein sequence
MATSSRAPKHHWTKEEDATLVECLVELSHPAAKGLLNKPFPHYDDLCYVFERDRATRGRAEIFVDVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDNIMGTRPSRA
SEGRAGSSGSKRKQERQTFEAVEIIRSAMEYANDQLKAIAEWPKEQCQDASVTCVKVVKQL