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PI0017821 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017821
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:20462997..20463541
RNA-Seq ExpressionPI0017821
SyntenyPI0017821
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.0e-2749.4Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT   T   S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.0e-2749.7Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYI--------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + +++FCKNC +                    
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYI--------------------

Query:  ----------PKSKSSSH-------LGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT
                  P+  S SH       +G SS+VA+AT +      S Q++DLH+LLKQVLSS S+ LAVT
Subjt:  ----------PKSKSSSH-------LGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.0e-2749.4Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT   T   S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]8.5e-2748.52Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT +      S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]2.2e-2749.7Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYIP-------------------
        I+P+H+RLIKVL+GLR EYESVRAALLHR+PLPS DA IQEILF+E +LG++SS+ S VALA TH   + +S FCKNC +                    
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYIP-------------------

Query:  ------------------KSKSSSHLGYSSIVASATPA--STP-SFQISDLHELLKQVLSSNSSTLAVT
                          K KSS+      IVA+ATP+  +TP +FQ++DLH+LLKQV+SSNS+ LAVT
Subjt:  ------------------KSKSSSHLGYSSIVASATPA--STP-SFQISDLHELLKQVLSSNSSTLAVT

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882004.1e-2748.52Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT +      S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-2748.81Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYE VRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT   T   S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT

A0A5A7TXR0 Putative mitochondrial protein4.9e-2849.7Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYI--------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + +++FCKNC +                    
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYI--------------------

Query:  ----------PKSKSSSH-------LGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT
                  P+  S SH       +G SS+VA+AT +      S Q++DLH+LLKQVLSS S+ LAVT
Subjt:  ----------PKSKSSSH-------LGYSSIVASATPA---STPSFQISDLHELLKQVLSSNSSTLAVT

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-2749.4Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT   T   S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-2749.4Show/hide
Query:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------
        ISPDH+RLIKVL+GLR EYESVRAALLHR+PLPS DA +QEILF+EK+LG++SS+ S VALA TH   + ++ FCKNC                      
Subjt:  ISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNC----------------------

Query:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT
                       +  K K S   G SS+VA+AT   T   S Q++DLH+LLKQV+SS S+ LAVT
Subjt:  ---------------YIPKSKSSSHLGYSSIVASATPAST--PSFQISDLHELLKQVLSSNSSTLAVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGTCCTGATCATTTACGATTGATCAAGGTGCTAATAGGACTGAGGCTCGAATACGAGTCCGTTCGTGCTGCTTTGTTACACCGTAGTCCGTTGCCATCACAAGA
TGCTACGATTCAGGAGATTCTGTTTAAGGAGAAAAAACTAGGCCTCATGTCCTCCATGTTCTCTAAGGTTGCACTAGCAATCACGCATCCCTGTCTTTCAACTGACTCCA
CATTCTGCAAAAATTGTTACATTCCCAAGTCCAAAAGCTCCTCTCATCTTGGTTATTCCTCTATTGTTGCTTCTGCCACACCAGCTTCTACTCCATCTTTTCAGATCAGT
GATTTGCATGAGTTACTTAAACAGGTGCTCTCTTCCAATTCTTCTACCCTTGCTGTCACACAAGTGCCTTTTGGCTCCTCGACTCAGCTTGTTGTAATCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAGTCCTGATCATTTACGATTGATCAAGGTGCTAATAGGACTGAGGCTCGAATACGAGTCCGTTCGTGCTGCTTTGTTACACCGTAGTCCGTTGCCATCACAAGA
TGCTACGATTCAGGAGATTCTGTTTAAGGAGAAAAAACTAGGCCTCATGTCCTCCATGTTCTCTAAGGTTGCACTAGCAATCACGCATCCCTGTCTTTCAACTGACTCCA
CATTCTGCAAAAATTGTTACATTCCCAAGTCCAAAAGCTCCTCTCATCTTGGTTATTCCTCTATTGTTGCTTCTGCCACACCAGCTTCTACTCCATCTTTTCAGATCAGT
GATTTGCATGAGTTACTTAAACAGGTGCTCTCTTCCAATTCTTCTACCCTTGCTGTCACACAAGTGCCTTTTGGCTCCTCGACTCAGCTTGTTGTAATCATATGA
Protein sequenceShow/hide protein sequence
MISPDHLRLIKVLIGLRLEYESVRAALLHRSPLPSQDATIQEILFKEKKLGLMSSMFSKVALAITHPCLSTDSTFCKNCYIPKSKSSSHLGYSSIVASATPASTPSFQIS
DLHELLKQVLSSNSSTLAVTQVPFGSSTQLVVII