CuGenDBv2

Gene ID	PI0017851
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr09:13296339..13296824
RNA-Seq Expression	PI0017851
Synteny	PI0017851
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.5e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

A0A5A7TU93 Gag/pol protein

1.5e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

A0A5A7TWB9 Gag/pol protein

1.5e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

A0A5A7V6N0 Gag/pol protein

1.5e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

A0A5D3CPJ6 Gag/pol protein

1.5e-62

77.64

Show/hide

Query:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG
        NVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KG
Subjt:  NVAETNGEVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAATCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCTGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCAGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGAGGTCATT
GATGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTTCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCGTGACTACCCTCCT
TAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGATAG

mRNA sequence

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Protein sequence

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MEECPPFPVRNASQTVRDAHDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGEVI
DEQSQVSFILESLPKSFLQFRSNAVMNKIEYTVTTLLNELQTFQSLMKNKG

PI0017851 (gene) of Melon (PI 482460) v1 genome