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PI0017868 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017868
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr11:18017534..18017926
RNA-Seq ExpressionPI0017868
SyntenyPI0017868
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73521.1 gag-pol polyprotein [Glycine max]4.0e-3253.79Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDG+N+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL++T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
AAO73527.1 gag-pol polyprotein [Glycine max]4.0e-3253.79Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDG+N+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL++T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
AAO73529.1 gag-pol polyprotein [Glycine max]3.1e-3254.55Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDGTN+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL+ T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
KAA0032368.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.7e-3870.54Show/hide
Query:  MDMIKE-GSTTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLNTCT
        M+MIKE GSTTRPPVLDG N+AYWKARM AF+KSID KTWK V+                    +WTDAEDQASL NSRALNAIYN  DQN+FKL+NTCT
Subjt:  MDMIKE-GSTTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLNTCT

Query:  SAKEAWKILEVTYEGTSKVKTSRLQLLST
        SAKEAWKILEV YEGTSKVKTS LQLLS+
Subjt:  SAKEAWKILEVTYEGTSKVKTSRLQLLST
NP_001235160.1 gag-protease polyprotein [Glycine max]3.1e-3254.55Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDGTN+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL+ T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
TrEMBL top hitse value%identityAlignment
A0A5A7SP99 Gag-pol polyprotein8.1e-3970.54Show/hide
Query:  MDMIKE-GSTTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLNTCT
        M+MIKE GSTTRPPVLDG N+AYWKARM AF+KSID KTWK V+                    +WTDAEDQASL NSRALNAIYN  DQN+FKL+NTCT
Subjt:  MDMIKE-GSTTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLNTCT

Query:  SAKEAWKILEVTYEGTSKVKTSRLQLLST
        SAKEAWKILEV YEGTSKVKTS LQLLS+
Subjt:  SAKEAWKILEVTYEGTSKVKTSRLQLLST
Q84VH6 Gag-pol polyprotein1.5e-3254.55Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDGTN+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL+ T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
Q84VH8 Gag-pol polyprotein1.9e-3253.79Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDG+N+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL++T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
Q84VI4 Gag-pol polyprotein1.9e-3253.79Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDG+N+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL++T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
V9H042 Gag-protease polyprotein1.5e-3254.55Show/hide
Query:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN
        M+M KEG    RPP+LDGTN+ YWKARM+AF+KS+D +TWK V+                      E+WT  ED+ +L NS+ALNA++NGVD+N+F+L+N
Subjt:  MDMIKEGS-TTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVV---------------------VENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLN

Query:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
        TCT AK+AW+IL+ T+EGTSKVK SRLQLL+T
Subjt:  TCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGATCAAAGAAGGATCTACAACTCGACCACCAGTTCTTGATGGAACCAACTTTGCTTATTGGAAAGCTCGTATGATTGCCTTTATCAAATCGATTGACTATAA
GACCTGGAAAGTTGTTGTTGTTGAAAATTGGACAGATGCTGAAGATCAAGCCTCTCTGGACAACTCAAGAGCTCTCAATGCTATTTATAATGGGGTTGACCAGAATCTAT
TTAAATTATTAAATACTTGTACCTCTGCAAAAGAAGCATGGAAAATACTCGAAGTGACTTATGAAGGTACATCTAAAGTAAAAACATCACGATTACAATTGCTAAGTACG
AATTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATATGATCAAAGAAGGATCTACAACTCGACCACCAGTTCTTGATGGAACCAACTTTGCTTATTGGAAAGCTCGTATGATTGCCTTTATCAAATCGATTGACTATAA
GACCTGGAAAGTTGTTGTTGTTGAAAATTGGACAGATGCTGAAGATCAAGCCTCTCTGGACAACTCAAGAGCTCTCAATGCTATTTATAATGGGGTTGACCAGAATCTAT
TTAAATTATTAAATACTTGTACCTCTGCAAAAGAAGCATGGAAAATACTCGAAGTGACTTATGAAGGTACATCTAAAGTAAAAACATCACGATTACAATTGCTAAGTACG
AATTGCTAA
Protein sequenceShow/hide protein sequence
MDMIKEGSTTRPPVLDGTNFAYWKARMIAFIKSIDYKTWKVVVVENWTDAEDQASLDNSRALNAIYNGVDQNLFKLLNTCTSAKEAWKILEVTYEGTSKVKTSRLQLLST
NC