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PI0017870 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017870
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:8324675..8327432
RNA-Seq ExpressionPI0017870
SyntenyPI0017870
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044259.1 putative retroelement [Cucumis melo var. makuwa]4.7e-0976.92Show/hide
Query:  DLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
        D ++P QY YHFG S +WGAGNTATQEGIHSFSIDR+HK
Subjt:  DLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]4.4e-0760.34Show/hide
Query:  SLRRVGAPWLTHLRHGVLRDLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
        S   V  P+   LR   LR    P QYAYHFG S +WGAGNTATQEGIHSFS DRV +
Subjt:  SLRRVGAPWLTHLRHGVLRDLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
KAA0051499.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-0785.29Show/hide
Query:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVH
        P QYAYHFG S +WGAGNTATQEGIHSFSIDRV+
Subjt:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVH
KAA0053490.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-0780.56Show/hide
Query:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
        P QYAYHFG S +WGAGN ATQEGIHSFSIDR HK+
Subjt:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
TYK19092.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-0780.56Show/hide
Query:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
        P QYAYHFG S +WGAGN ATQEGIHSFSIDR HK+
Subjt:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
TrEMBL top hitse value%identityAlignment
A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass2.2e-0760.34Show/hide
Query:  SLRRVGAPWLTHLRHGVLRDLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
        S   V  P+   LR   LR    P QYAYHFG S +WGAGNTATQEGIHSFS DRV +
Subjt:  SLRRVGAPWLTHLRHGVLRDLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
A0A5A7TSQ9 Putative retroelement2.3e-0976.92Show/hide
Query:  DLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
        D ++P QY YHFG S +WGAGNTATQEGIHSFSIDR+HK
Subjt:  DLLSPIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHK
A0A5A7UDH2 Gag/pol protein2.2e-0785.29Show/hide
Query:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVH
        P QYAYHFG S +WGAGNTATQEGIHSFSIDRV+
Subjt:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVH
A0A5A7UE73 Retrotransposon protein7.4e-0880.56Show/hide
Query:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
        P QYAYHFG S +WGAGN ATQEGIHSFSIDR HK+
Subjt:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
A0A5D3D6D5 Retrotransposon protein7.4e-0880.56Show/hide
Query:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
        P QYAYHFG S +WGAGN ATQEGIHSFSIDR HK+
Subjt:  PIQYAYHFGGSFNWGAGNTATQEGIHSFSIDRVHKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGGAGTTAAACCCTTTAAAAATTTTCCTTTTCCTTCCTTATTCTTCTCATTCCTTCACCGCGTCCAGGCTATTGCCGAAATTCCACTCTTCCCTTCTCTCAAG
CCCTAGTGCCGCCCATCTCCTTGCCGCCTGGAGCCGTTTCGCCTGTCCGTACCGTCCGAGCGTGCCCGTGCCCGTAACTTGGTCGTCCCGCGAGGAGTGCCGAACGCAGA
CCCTCGTCGTGAGCCGCGTTCCTTGCAAGGCATTTCACCTCTGGTCGTCTTCCCCTATTCGTTTAGCATTCCCTTGCCGCGGGCAGCCCAGCTTGGACTTCCCTCCTCTC
CGCGAGGTAGTGGCGTTCCGCCACAAGGTCCTTCTGTCCGCAAGCAGCCCTGTGTTTCGATTAGCCTTCTCTGTCCGCGAGCTGAGGTGCTCTGTCCGCCTCTCTCCGTT
TTATCTCTTGCCGCGGTCTCTTATTCAAGGTGGGTTAAGGTGCCGAGTAGTTTCCCTTAGTTCGTGGATTTTGAGCATTTGGTGCTTGAGGTTTCCATTTGGCGATTCTC
GGGTTTCTCTTCGTCGCGTTGGTGCTCCTTGGTTGACGCATTTGAGGCATGGAGTCCTACGGGACCTTTTGTCGCCGATTCAATATGCCTACCACTTTGGGGGTTCGTTT
AATTGGGGAGCTGGGAACACAGCTACACAAGAAGGAATTCACTCCTTCTCTATAGATAGAGTCCATAAGGTCCCCTTGTTAGCTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTGGAGTTAAACCCTTTAAAAATTTTCCTTTTCCTTCCTTATTCTTCTCATTCCTTCACCGCGTCCAGGCTATTGCCGAAATTCCACTCTTCCCTTCTCTCAAG
CCCTAGTGCCGCCCATCTCCTTGCCGCCTGGAGCCGTTTCGCCTGTCCGTACCGTCCGAGCGTGCCCGTGCCCGTAACTTGGTCGTCCCGCGAGGAGTGCCGAACGCAGA
CCCTCGTCGTGAGCCGCGTTCCTTGCAAGGCATTTCACCTCTGGTCGTCTTCCCCTATTCGTTTAGCATTCCCTTGCCGCGGGCAGCCCAGCTTGGACTTCCCTCCTCTC
CGCGAGGTAGTGGCGTTCCGCCACAAGGTCCTTCTGTCCGCAAGCAGCCCTGTGTTTCGATTAGCCTTCTCTGTCCGCGAGCTGAGGTGCTCTGTCCGCCTCTCTCCGTT
TTATCTCTTGCCGCGGTCTCTTATTCAAGGTGGGTTAAGGTGCCGAGTAGTTTCCCTTAGTTCGTGGATTTTGAGCATTTGGTGCTTGAGGTTTCCATTTGGCGATTCTC
GGGTTTCTCTTCGTCGCGTTGGTGCTCCTTGGTTGACGCATTTGAGGCATGGAGTCCTACGGGACCTTTTGTCGCCGATTCAATATGCCTACCACTTTGGGGGTTCGTTT
AATTGGGGAGCTGGGAACACAGCTACACAAGAAGGAATTCACTCCTTCTCTATAGATAGAGTCCATAAGGTCCCCTTGTTAGCTCAATAA
Protein sequenceShow/hide protein sequence
MFLELNPLKIFLFLPYSSHSFTASRLLPKFHSSLLSSPSAAHLLAAWSRFACPYRPSVPVPVTWSSREECRTQTLVVSRVPCKAFHLWSSSPIRLAFPCRGQPSLDFPPL
REVVAFRHKVLLSASSPVFRLAFSVRELRCSVRLSPFYLLPRSLIQGGLRCRVVSLSSWILSIWCLRFPFGDSRVSLRRVGAPWLTHLRHGVLRDLLSPIQYAYHFGGSF
NWGAGNTATQEGIHSFSIDRVHKVPLLAQ