; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0017879 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017879
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:5456063..5457371
RNA-Seq ExpressionPI0017879
SyntenyPI0017879
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-14775.81Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD
        MEK+D+ARPIS ILDG+           F IGRKLW IVTGDITKPVKP         + ET+ E+ +YIE LEDWDSKNHQIITWLGNTS   IHTQFD
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD

Query:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ
         FD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE VRAA LHRNPLPSLDAAVQ
Subjt:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ

Query:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT
        EILFEEKRLGI S +HS+ ALATTH R  NE  FCK CKL GHK ANCP I+CRYCHK+GHIL  CPTRPPRPP HSHKPK S  +GS SVVAAATS  T
Subjt:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT

Query:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
         PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS   VQSLPPIHSADG+  S
Subjt:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-14776.08Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD
        MEK+D+ARPIS ILDG+           F IGRKLW IVTGDITKPVKP         + ET+ E+ +YIE LEDWDSKNHQIITWLGNTS   IHTQFD
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD

Query:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ
         FD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YESVRAA LHRNPLPSLDAAVQ
Subjt:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ

Query:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT
        EILFEEKRLGI S +HS+ ALATTH R  NE  FCK CKL GHK ANCP I+CRYCHK+GHIL  CPTRPPRPP HSHKPK S  +GS SVVAAATS  T
Subjt:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT

Query:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
         PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS   VQSLPPIHSADG+  S
Subjt:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.5e-14271.76Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP-----------TKNDDVDTT---IQETTPEN-KYIESLEDWDSKNHQIITW
        MEK+ +ARPIS ILDG+           F IGRKLW IVTGDITKPVKP           T+++D +T+   + E T E+ +YIE LEDWDSKNHQIITW
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP-----------TKNDDVDTT---IQETTPEN-KYIESLEDWDSKNHQIITW

Query:  LGNTS---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAF
        LGNTS   IHTQFD FD+AKELW+FL TRFQSI LAHYYQLHS LV+LNQEVGQSVNEYL T QPIWTQLDQAKIS DH RLIKVL+GL  +YESVRAA 
Subjt:  LGNTS---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAF

Query:  LHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNS
        LHRNPLPSLDAAVQEILFEEKRLGI S + S+ ALATTH R  NE +FCK CKL GHK ANCP I+CRYC+K+GHIL  CPTRPPRPPSHSHK K S   
Subjt:  LHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNS

Query:  GSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
        GS SVVAAATS D T   S QL DLHDLLKQV+SS STALA T GTSWLLDSACCNHMTSD+SLLSS + VQSLPPIHSADG+  S
Subjt:  GSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.7e-13570.6Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP------TKNDDV---DTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS
        MEKSDIARPIS  LDGS           F IGRKLW IVTGDITKPVKP      T  + +   D    +TT E+ KYIE LEDWD KNHQIITWLGNTS
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP------TKNDDV---DTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS

Query:  ---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNP
           IHTQFD FDTAKELWDFL TRFQSI LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQL+QAKISLDH  LIKVL+GL P+YESV AA LHRNP
Subjt:  ---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNP

Query:  LPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSV
        LPSLD A+Q+ILFEEKRL I S + S+ AL T+  +PT+E++FCK CKL GH  ANCP I+CRYCHK+GHIL  CPTRPPRPP HSHKPK SP +G+ SV
Subjt:  LPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSV

Query:  VAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
        VAAAT  D T   +FQL DLHDLLKQVISSNSTALA T GTSWLLD AC NHMTS+   LSS   VQSLPPIHS  G+  S
Subjt:  VAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

KAA0058316.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.8e-14675.54Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD
        MEK+D+ARPIS ILDG+           F IGRKLW IVTGDITKPVKP         + ET+ EN +YIE LEDWDSKNHQIITWLGNTS   IHTQFD
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD

Query:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ
         FD+AK+LWDFL TRFQSI LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE VRAA LHRN LPSLDAAVQ
Subjt:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ

Query:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT
        EILFEEKRLGI S +HS+ ALATTH R  NE  FCK CKL GHK ANCP I+C+YCHK+GHIL  CPTRPPRPP HSHKPK    +GS SVVAAATS  T
Subjt:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT

Query:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
         PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS T VQSLPPIHSADG+  S
Subjt:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

TrEMBL top hitse value%identityAlignment
A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-14775.81Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD
        MEK+D+ARPIS ILDG+           F IGRKLW IVTGDITKPVKP         + ET+ E+ +YIE LEDWDSKNHQIITWLGNTS   IHTQFD
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD

Query:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ
         FD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE VRAA LHRNPLPSLDAAVQ
Subjt:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ

Query:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT
        EILFEEKRLGI S +HS+ ALATTH R  NE  FCK CKL GHK ANCP I+CRYCHK+GHIL  CPTRPPRPP HSHKPK S  +GS SVVAAATS  T
Subjt:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT

Query:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
         PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS   VQSLPPIHSADG+  S
Subjt:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

A0A5A7TXR0 Putative mitochondrial protein1.2e-14271.76Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP-----------TKNDDVDTT---IQETTPEN-KYIESLEDWDSKNHQIITW
        MEK+ +ARPIS ILDG+           F IGRKLW IVTGDITKPVKP           T+++D +T+   + E T E+ +YIE LEDWDSKNHQIITW
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP-----------TKNDDVDTT---IQETTPEN-KYIESLEDWDSKNHQIITW

Query:  LGNTS---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAF
        LGNTS   IHTQFD FD+AKELW+FL TRFQSI LAHYYQLHS LV+LNQEVGQSVNEYL T QPIWTQLDQAKIS DH RLIKVL+GL  +YESVRAA 
Subjt:  LGNTS---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAF

Query:  LHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNS
        LHRNPLPSLDAAVQEILFEEKRLGI S + S+ ALATTH R  NE +FCK CKL GHK ANCP I+CRYC+K+GHIL  CPTRPPRPPSHSHK K S   
Subjt:  LHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNS

Query:  GSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
        GS SVVAAATS D T   S QL DLHDLLKQV+SS STALA T GTSWLLDSACCNHMTSD+SLLSS + VQSLPPIHSADG+  S
Subjt:  GSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

A0A5A7UKE6 Integrase, catalytic core8.2e-13670.6Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP------TKNDDV---DTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS
        MEKSDIARPIS  LDGS           F IGRKLW IVTGDITKPVKP      T  + +   D    +TT E+ KYIE LEDWD KNHQIITWLGNTS
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKP------TKNDDV---DTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS

Query:  ---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNP
           IHTQFD FDTAKELWDFL TRFQSI LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQL+QAKISLDH  LIKVL+GL P+YESV AA LHRNP
Subjt:  ---IHTQFDVFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNP

Query:  LPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSV
        LPSLD A+Q+ILFEEKRL I S + S+ AL T+  +PT+E++FCK CKL GH  ANCP I+CRYCHK+GHIL  CPTRPPRPP HSHKPK SP +G+ SV
Subjt:  LPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSV

Query:  VAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
        VAAAT  D T   +FQL DLHDLLKQVISSNSTALA T GTSWLLD AC NHMTS+   LSS   VQSLPPIHS  G+  S
Subjt:  VAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

A0A5A7UVX4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-14675.54Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD
        MEK+D+ARPIS ILDG+           F IGRKLW IVTGDITKPVKP         + ET+ EN +YIE LEDWDSKNHQIITWLGNTS   IHTQFD
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD

Query:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ
         FD+AK+LWDFL TRFQSI LAHYYQLHS LVSLNQEVGQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YE VRAA LHRN LPSLDAAVQ
Subjt:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ

Query:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT
        EILFEEKRLGI S +HS+ ALATTH R  NE  FCK CKL GHK ANCP I+C+YCHK+GHIL  CPTRPPRPP HSHKPK    +GS SVVAAATS  T
Subjt:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT

Query:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
         PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS T VQSLPPIHSADG+  S
Subjt:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-14876.08Show/hide
Query:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD
        MEK+D+ARPIS ILDG+           F IGRKLW IVTGDITKPVKP         + ET+ E+ +YIE LEDWDSKNHQIITWLGNTS   IHTQFD
Subjt:  MEKSDIARPISIILDGS-------PNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPEN-KYIESLEDWDSKNHQIITWLGNTS---IHTQFD

Query:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ
         FD+AKELWDFL TRFQSI LAHYYQLHS LVSLNQE+GQSVNEYL TLQPIWTQLDQAKIS DH RLIKVL+GL P+YESVRAA LHRNPLPSLDAAVQ
Subjt:  VFDTAKELWDFLSTRFQSIDLAHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQ

Query:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT
        EILFEEKRLGI S +HS+ ALATTH R  NE  FCK CKL GHK ANCP I+CRYCHK+GHIL  CPTRPPRPP HSHKPK S  +GS SVVAAATS  T
Subjt:  EILFEEKRLGISSFMHSNTALATTHSRPTNEVTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDT

Query:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS
         PS S QL DLHDLLKQVISS STALA T GTSWLLDSACCNHMTSDISLLSS   VQSLPPIHSADG+  S
Subjt:  TPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACCNHMTSDISLLSSPTHVQSLPPIHSADGSGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAGTGATATCGCACGTCCCATTAGCATCATTCTGGACGGGTCACCAAATGAGAAGTTTTTTATTGGTCGAAAATTATGGTGCATAGTTACTGGCGACATCAC
CAAGCCTGTCAAACCCACTAAGAATGATGATGTAGATACTACCATTCAAGAGACTACTCCCGAAAATAAGTACATTGAAAGTCTTGAGGACTGGGATAGCAAAAATCATC
AAATCATCACATGGTTGGGTAACACCTCTATTCATACACAATTTGATGTTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTG
GCACATTATTATCAATTACATTCTCGCCTTGTTAGTCTAAACCAGGAAGTTGGACAATCTGTGAATGAATACCTTACCACTCTTCAGCCCATATGGACTCAGTTAGATCA
GGCAAAAATCAGTCTTGATCATAGCCGTCTCATCAAAGTACTTGTGGGACTCTGTCCAAAGTATGAATCTGTTCGGGCTGCCTTCTTACACCGCAACCCTCTACCATCTC
TTGACGCCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTTTATGCACTCTAATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAG
GTCACCTTCTGCAAATATTGTAAACTCCAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGAAAATCTGTCCAAC
TCGTCCCCCGCGCCCTCCTAGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTTATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAA
GCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGC
AACCATATGACCTCTGACATTTCATTATTGTCATCCCCTACCCATGTCCAATCCCTTCCACCAATCCATTCTGCTGATGGTTCAGGATCCTCAGACGGGCCACGTGATTG
GTACGGGACGGAAGGTGGGACGATTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAGTGATATCGCACGTCCCATTAGCATCATTCTGGACGGGTCACCAAATGAGAAGTTTTTTATTGGTCGAAAATTATGGTGCATAGTTACTGGCGACATCAC
CAAGCCTGTCAAACCCACTAAGAATGATGATGTAGATACTACCATTCAAGAGACTACTCCCGAAAATAAGTACATTGAAAGTCTTGAGGACTGGGATAGCAAAAATCATC
AAATCATCACATGGTTGGGTAACACCTCTATTCATACACAATTTGATGTTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGATCTG
GCACATTATTATCAATTACATTCTCGCCTTGTTAGTCTAAACCAGGAAGTTGGACAATCTGTGAATGAATACCTTACCACTCTTCAGCCCATATGGACTCAGTTAGATCA
GGCAAAAATCAGTCTTGATCATAGCCGTCTCATCAAAGTACTTGTGGGACTCTGTCCAAAGTATGAATCTGTTCGGGCTGCCTTCTTACACCGCAACCCTCTACCATCTC
TTGACGCCGCCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTTTATGCACTCTAATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAG
GTCACCTTCTGCAAATATTGTAAACTCCAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGAAAATCTGTCCAAC
TCGTCCCCCGCGCCCTCCTAGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTTATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAA
GCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGC
AACCATATGACCTCTGACATTTCATTATTGTCATCCCCTACCCATGTCCAATCCCTTCCACCAATCCATTCTGCTGATGGTTCAGGATCCTCAGACGGGCCACGTGATTG
GTACGGGACGGAAGGTGGGACGATTATTTGA
Protein sequenceShow/hide protein sequence
MEKSDIARPISIILDGSPNEKFFIGRKLWCIVTGDITKPVKPTKNDDVDTTIQETTPENKYIESLEDWDSKNHQIITWLGNTSIHTQFDVFDTAKELWDFLSTRFQSIDL
AHYYQLHSRLVSLNQEVGQSVNEYLTTLQPIWTQLDQAKISLDHSRLIKVLVGLCPKYESVRAAFLHRNPLPSLDAAVQEILFEEKRLGISSFMHSNTALATTHSRPTNE
VTFCKYCKLQGHKIANCPIIKCRYCHKQGHILKICPTRPPRPPSHSHKPKSSPNSGSLSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTALAATSGTSWLLDSACC
NHMTSDISLLSSPTHVQSLPPIHSADGSGSSDGPRDWYGTEGGTII