; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0017901 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017901
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr02:17334467..17335219
RNA-Seq ExpressionPI0017901
SyntenyPI0017901
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-8971.31Show/hide
Query:  DRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANV
        DRNTVDA AGGALADK PTEAREL S+MAENSQ+F NRASELD+SLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  DRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANV

Query:  IRKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGK
        +RKY+PH NTYN+GWRDN NLRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK
Subjt:  IRKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGK

Query:  ILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        IL+TP++ E+K TS  + L  K+E  EEK+ET+  P +SK  K  + D+TP
Subjt:  ILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-8872Show/hide
Query:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI
        NTVDAA G ALADKTPTEAREL SRMA+N Q+FGNRASE D+SLTKEVSELKSQMLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++
Subjt:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI

Query:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI
        R+Y+PHSNTYN+GWRDN NLRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKGKL AQ DHANVSAISLRSGKI
Subjt:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI

Query:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        L+TP++ E+KVTS  + L +K+E  EEK+ET+  PS+SK  KS + D+TP
Subjt:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-8871.9Show/hide
Query:  RNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI
        RNT+D AAGGALADKTPTEAREL SRMAENS++FGNRASELD+SLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++
Subjt:  RNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI

Query:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI
        R+Y+PHSNTYN+GWRDN NLRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ ++KQQM+ LT AISK++GKGKL AQPDHANVSAISLRSGKI
Subjt:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI

Query:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKGKS
        L+TP++ E+K+TS  + L +K+E  EEK+++    ++  G++
Subjt:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKGKS

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-8871.08Show/hide
Query:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR
        NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTTLLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R
Subjt:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR

Query:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL
        +Y+PH NTYN+GWRDN NLRWGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL AQP HANVS ISLRSGKIL
Subjt:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL

Query:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        +TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  KS + D+TP
Subjt:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

XP_008465471.1 PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]5.1e-8871.08Show/hide
Query:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR
        NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTTLLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R
Subjt:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR

Query:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL
        +Y+PH NTYN+GWRDN NLRWGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL AQP HANVS ISLRSGKIL
Subjt:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL

Query:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        +TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  KS + D+TP
Subjt:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

TrEMBL top hitse value%identityAlignment
A0A1S3CQF6 uncharacterized protein LOC1035030782.5e-8871.08Show/hide
Query:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR
        NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTTLLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R
Subjt:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR

Query:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL
        +Y+PH NTYN+GWRDN NLRWGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL AQP HANVS ISLRSGKIL
Subjt:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL

Query:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        +TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  KS + D+TP
Subjt:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

A0A5A7VQ60 Retrotransposon gag protein2.5e-8872Show/hide
Query:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI
        NTVDAA G ALADKTPTEAREL SRMA+N Q+FGNRASE D+SLTKEVSELKSQMLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++
Subjt:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI

Query:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI
        R+Y+PHSNTYN+GWRDN NLRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKGKL AQ DHANVSAISLRSGKI
Subjt:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI

Query:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        L+TP++ E+KVTS  + L +K+E  EEK+ET+  PS+SK  KS + D+TP
Subjt:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

A0A5D3CB46 Retrotransposon gag protein8.6e-8971.9Show/hide
Query:  RNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI
        RNT+D AAGGALADKTPTEAREL SRMAENS++FGNRASELD+SLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++
Subjt:  RNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVI

Query:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI
        R+Y+PHSNTYN+GWRDN NLRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ ++KQQM+ LT AISK++GKGKL AQPDHANVSAISLRSGKI
Subjt:  RKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKI

Query:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKGKS
        L+TP++ E+K+TS  + L +K+E  EEK+++    ++  G++
Subjt:  LETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKGKS

A0A5D3CQR9 Retrotransposon gag protein2.5e-8871.08Show/hide
Query:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR
        NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTTLLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R
Subjt:  NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIR

Query:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL
        +Y+PH NTYN+GWRDN NLRWGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL AQP HANVS ISLRSGKIL
Subjt:  KYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKIL

Query:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        +TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  KS + D+TP
Subjt:  ETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

A0A5D3CRR8 Retrotransposon gag protein5.9e-9071.31Show/hide
Query:  DRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANV
        DRNTVDA AGGALADK PTEAREL S+MAENSQ+F NRASELD+SLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  DRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANV

Query:  IRKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGK
        +RKY+PH NTYN+GWRDN NLRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK
Subjt:  IRKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGK

Query:  ILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP
        IL+TP++ E+K TS  + L  K+E  EEK+ET+  P +SK  K  + D+TP
Subjt:  ILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG-KSHILDYTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCAGACAAAACTCCTACTGAGGCGAGAGAGCTCCATTCAAGGATGGCTGAAAATTCACAGAATTTTGG
AAATAGAGCATCCGAGCTCGATAGTTCATTAACCAAGGAAGTAAGTGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTG
TTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACAATCCTCATAGCAAC
ACTTACAATGCCGGTTGGAGAGACAACTCTAACCTAAGGTGGGGAAACGACAACCAAACACCTTCACAAGCGACTTCCTCTTCAAATAATCAAGGTACGAATTTGGAATA
TTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATAAAGCAACAAATGTCTCATCTGACTAATGCGATAAGCAAGCTAGAAGGTAAAGGTAAACTTC
TGGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCTCTATCCTTCTAGAA
AATAAAGATGAGAAAAATGAAGAAAAATTAGAAACTAGTTCTCTACCATCTAGTTCTAAAGGTAAATCTCATATTTTGGATTATACTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCAGACAAAACTCCTACTGAGGCGAGAGAGCTCCATTCAAGGATGGCTGAAAATTCACAGAATTTTGG
AAATAGAGCATCCGAGCTCGATAGTTCATTAACCAAGGAAGTAAGTGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTG
TTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACAATCCTCATAGCAAC
ACTTACAATGCCGGTTGGAGAGACAACTCTAACCTAAGGTGGGGAAACGACAACCAAACACCTTCACAAGCGACTTCCTCTTCAAATAATCAAGGTACGAATTTGGAATA
TTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATAAAGCAACAAATGTCTCATCTGACTAATGCGATAAGCAAGCTAGAAGGTAAAGGTAAACTTC
TGGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCTCTATCCTTCTAGAA
AATAAAGATGAGAAAAATGAAGAAAAATTAGAAACTAGTTCTCTACCATCTAGTTCTAAAGGTAAATCTCATATTTTGGATTATACTCCATAA
Protein sequenceShow/hide protein sequence
MDRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSN
TYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSSEEKVTSTSILLE
NKDEKNEEKLETSSLPSSSKGKSHILDYTP