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PI0017950 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017950
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:24508274..24508450
RNA-Seq ExpressionPI0017950
SyntenyPI0017950
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048463.1 uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa]6.1e-1680.7Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQT NQ   VSSKFKIP+PKAFNGNRD KE ENFIFDMEQYFKASGT  +ETKVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

KAA0056239.1 uncharacterized protein E6C27_scaffold226G00030 [Cucumis melo var. makuwa]3.9e-1578.95Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQTPNQA  V SK KI + KAFNGNRD KEFENFIFDMEQYFKASGT +E+TKVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

KAA0067610.1 uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa]3.9e-1580.36Show/hide
Query:  GNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        GNQT N  C VSSK KIPEPKAFNGNRD KE E FIFDM+QYFKASGT  EETKVT
Subjt:  GNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

KAE8649361.1 hypothetical protein Csa_019161, partial [Cucumis sativus]3.9e-1578.95Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQT NQAC VSSKFKIP+PKA  GNRD KE ENFIF ME+YFKASGT  EETKVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

WP_217833205.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.3e-1571.93Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQTPNQ   + ++FKIPEPKAF+GNRD K+ ENFIFDM+QYFKASGT+ EE KVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

TrEMBL top hitse value%identityAlignment
A0A5A7URV8 Uncharacterized protein1.9e-1578.95Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQTPNQA  V SK KI + KAFNGNRD KEFENFIFDMEQYFKASGT +E+TKVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

A0A5A7VKA0 Uncharacterized protein1.9e-1580.36Show/hide
Query:  GNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        GNQT N  C VSSK KIPEPKAFNGNRD KE E FIFDM+QYFKASGT  EETKVT
Subjt:  GNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

A0A5D3BUS6 Uncharacterized protein3.2e-1575.44Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        MGNQTPNQ C VSS+ KIPEPKAF+ NRD KE ENFI D++QYFKASG   EETKVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

A0A5D3DYE0 Uncharacterized protein2.9e-1680.7Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQT NQ   VSSKFKIP+PKAFNGNRD KE ENFIFDMEQYFKASGT  +ETKVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

A0A6J1D906 Reverse transcriptase2.3e-1366.67Show/hide
Query:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT
        +GNQ PNQA +  +K K+PEPK FNGNRD K+ ENF+FD+EQYFKA+GT  EE KVT
Subjt:  MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAACCAAACCCCAAATCAAGCATGTATTGTTTCGAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGTGATGATAAAGAGTTTGAGAATTTCAT
CTTCGATATGGAACAATACTTTAAGGCTAGTGGAACCATCTTTGAAGAAACTAAGGTGACACGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAACCAAACCCCAAATCAAGCATGTATTGTTTCGAGCAAGTTCAAGATCCCAGAACCCAAAGCCTTCAATGGGAACCGTGATGATAAAGAGTTTGAGAATTTCAT
CTTCGATATGGAACAATACTTTAAGGCTAGTGGAACCATCTTTGAAGAAACTAAGGTGACACGTTAG
Protein sequenceShow/hide protein sequence
MGNQTPNQACIVSSKFKIPEPKAFNGNRDDKEFENFIFDMEQYFKASGTIFEETKVTR