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PI0017984 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017984
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:14926242..14926406
RNA-Seq ExpressionPI0017984
SyntenyPI0017984
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041234.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-1268.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

TYK16035.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-1268.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

XP_008457266.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]1.3e-1270.37Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMFS+W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

XP_016903646.1 PREDICTED: uncharacterized protein LOC107992265 [Cucumis melo]1.7e-1268.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

XP_031740445.1 uncharacterized protein LOC116403439 [Cucumis sativus]1.2e-1368.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN   ++D+DEGDSTYA I GDDIQ+VE+SNEW++WRDD A EMF++WQLRN+
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

TrEMBL top hitse value%identityAlignment
A0A1S3C570 putative nuclease HARBI16.3e-1370.37Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMFS+W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

A0A1S4E5X8 uncharacterized protein LOC1079922658.2e-1368.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

A0A5A7SYE7 Putative nuclease HARBI12.4e-1268.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A  A DDI Y+E SNEWS+WRDD AEEMFS+W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

A0A5A7TCQ1 Retrotransposon protein8.2e-1368.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

A0A5D3CX37 Retrotransposon protein8.2e-1368.52Show/hide
Query:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ
        MTN D+ ++IDE DST+A IA DDI Y+E+SNEWS+WRDD AEEMF++W+LRNQ
Subjt:  MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAACACCGATGTAATAGAGGACATCGATGAAGGTGACTCAACATACGCAATGATTGCAGGTGATGACATTCAGTATGTTGAGAGCTCGAACGAATGGAGTAAGTG
GAGGGACGATAAAGCGGAGGAGATGTTCAGTCAATGGCAATTGCGGAATCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAACACCGATGTAATAGAGGACATCGATGAAGGTGACTCAACATACGCAATGATTGCAGGTGATGACATTCAGTATGTTGAGAGCTCGAACGAATGGAGTAAGTG
GAGGGACGATAAAGCGGAGGAGATGTTCAGTCAATGGCAATTGCGGAATCAGTAG
Protein sequenceShow/hide protein sequence
MTNTDVIEDIDEGDSTYAMIAGDDIQYVESSNEWSKWRDDKAEEMFSQWQLRNQ