CuGenDBv2

Gene ID	PI0017990
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr07:6406450..6407792
RNA-Seq Expression	PI0017990
Synteny	PI0017990
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046553.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.9e-58

68.36

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KK+N+ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPFAE S+ L +   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FTTPLTK++KGEAK+IEK+ +EA LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

3.2e-56

67.23

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Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FT PLTK++KGEAK+IEK+ ++A LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

KAA0057579.1 uncharacterized protein E6C27_scaffold497G00510 [Cucumis melo var. makuwa]

5.5e-56

66.67

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E++STEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   +ILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FTTPLTK++KGEAK+I+K+ +EA LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

3.2e-56

67.23

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FT PLTK++KGEAK+IEK+ ++A LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]

3.2e-56

67.23

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FT PLTK++KGEAK+IEK+ ++A LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TSN4 Ty3-gypsy retrotransposon protein

4.8e-58

68.36

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KK+N+ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPFAE S+ L +   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FTTPLTK++KGEAK+IEK+ +EA LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

A0A5A7TZU9 Ribonuclease H

1.5e-56

67.23

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FT PLTK++KGEAK+IEK+ ++A LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

A0A5A7UVK7 Uncharacterized protein

2.6e-56

66.67

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E++STEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   +ILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FTTPLTK++KGEAK+I+K+ +EA LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

A0A5D3BIH8 Uncharacterized protein

1.5e-56

67.23

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FT PLTK++KGEAK+IEK+ ++A LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

A0A5D3D1E5 Ribonuclease H

1.5e-56

67.23

Show/hide

Query:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES
        E+ISTEVPV KGT+K EQ  I  KKS++ D LN ++N ELTT+ K   P  E+I   Q++ S P VLRYIPLSRRK GESPF E S+ L V   EILKE+
Subjt:  EVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENSQKLAVGGVEILKES

Query:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ
        FT PLTK++KGEAK+IEK+ ++A LPE+RT EGF+PKAYKLMAKAGYDF TRTELKSVKIFDER  LSP QKKLQKQ
Subjt:  FTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACATCTGAACTATTTACTCAAAAGAAGAAGAAAGGCATGTGGAGGATGCTGATGAGGGATGAACACTATGAAGTCATATCGACTGAAGTTCCCGTAGCCAAAGGTAC
TTATAAGCTCGAGCAAAGAACGATCATAATAAAGAAGTCAAATGAAGTGGATGAACTCAATGGTCGAAAGAATGATGAACTAACGACCCAAGCTAAGTTTGAAGTGCCGA
CAAACGAAAGGATAACGGTCCCTCAAGAAAAAGCCTCCAAACCTTCCGTTTTACGCTATATTCCACTGTCTCGACGTAAGAATGGAGAATCGCCATTTGCAGAAAATTCG
CAAAAATTAGCGGTTGGAGGTGTTGAAATATTAAAGGAAAGTTTCACCACACCACTTACCAAGATGGATAAAGGAGAGGCGAAAAGAATTGAGAAAGAGAGCATAGAAGC
ATGCCTTCCAGAAAAACGAACGGCGGAGGGATTTAACCCAAAAGCATATAAGTTGATGGCAAAGGCGGGTTATGACTTTATAACCCGTACTGAGCTTAAAAGCGTGAAGA
TATTTGATGAAAGGCATGGGCTTTCTCCTATGCAAAAGAAGCTTCAAAAGCAATGA

mRNA sequence

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Protein sequence

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MTSELFTQKKKKGMWRMLMRDEHYEVISTEVPVAKGTYKLEQRTIIIKKSNEVDELNGRKNDELTTQAKFEVPTNERITVPQEKASKPSVLRYIPLSRRKNGESPFAENS
QKLAVGGVEILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFNPKAYKLMAKAGYDFITRTELKSVKIFDERHGLSPMQKKLQKQ

PI0017990 (gene) of Melon (PI 482460) v1 genome