; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018015 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018015
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionHMG-Y-related protein A-like
Genome locationchr06:15942050..15944184
RNA-Seq ExpressionPI0018015
SyntenyPI0018015
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016584 - nucleosome positioning (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domainsIPR000116 - High mobility group protein HMGA
IPR005818 - Linker histone H1/H5, domain H15
IPR017956 - AT hook, DNA-binding motif
IPR031059 - High mobility group protein HMGA, plant
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145857.1 HMG-Y-related protein A isoform X2 [Cucumis sativus]2.6e-8997.22Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
         SS +S PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_008456999.1 PREDICTED: HMG-Y-related protein A-like [Cucumis melo]4.7e-9198.33Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
         SS +SPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_022935331.1 HMG-Y-related protein A-like [Cucurbita moschata]7.2e-8491.26Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        P S LSPPKPRGRPPKDPNA   PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_031739266.1 HMG-Y-related protein A isoform X1 [Cucumis sativus]3.5e-8689.29Show/hide
Query:  MATQEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP
        MATQEVNKPPSLPPYPE                MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP
Subjt:  MATQEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP

Query:  PRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        PRRGRGRPPKSKSPLP SS +S PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_038878302.1 HMG-Y-related protein A-like [Benincasa hispida]8.5e-8591.67Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MAT+EVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        PSS LSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGK RGRPRKFP + T P+PP PSGRPRGRPPKVK +LTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

TrEMBL top hitse value%identityAlignment
A0A0A0LCH9 H15 domain-containing protein1.2e-8997.22Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
         SS +S PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A1S3C432 HMG-Y-related protein A-like2.3e-9198.33Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
         SS +SPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A5D3DJY3 HMG-Y-related protein A-like2.3e-9198.33Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
         SS +SPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A6J1F494 HMG-Y-related protein A-like3.5e-8491.26Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        P S LSPPKPRGRPPKDPNA   PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A6J1J6G8 HMG-Y-related protein A-like3.5e-8491.26Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        P S LSPPKPRGRPPKDPNA   PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVSVQQ
Subjt:  PSSGLSPPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

SwissProt top hitse value%identityAlignment
Q00423 HMG-Y-related protein A7.8e-5767.78Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HLN MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPA-PSGRPRGRPPKVKATLTEVSVQ
        P + +SPP+PRGRPPKDPNAPPK PK    K + G+G+PRGRP+K P+S    AP A  SGRPRGRPPKVK  LTEVSV+
Subjt:  PSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPA-PSGRPRGRPPKVKATLTEVSVQ

Q10370 HMG-Y-related protein B (Fragment)9.9e-4465.38Show/hide
Query:  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNAPPKP
        ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP APP+RGRGRPPK K PLPP + +SPP+PRGRPPKDPNAPPK 
Subjt:  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNAPPKP

Query:  PKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPS-GRPRGRPPKVKATLTEVSVQ
        PK    K +  TG+PRGRP+K  +S   P+P A S GRPRGRPPKVK  LTEVSV+
Subjt:  PKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPS-GRPRGRPPKVKATLTEVSVQ

Q43386 HMG-Y-related protein A4.9e-3551.38Show/hide
Query:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLS----
        SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+  KNNYMK DP APP+RGRGRPPK K+     +  +    
Subjt:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLS----

Query:  -------PPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQS-ATTPAPPAPSG------RPRGRPPKVKATL
               PP+ RGRPPK    P  P +P Q KV +G+G+PRGRP K P++ + T A P P+       R RGRPPKVK T+
Subjt:  -------PPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQS-ATTPAPPAPSG------RPRGRPPKVKATL

Q9FYS5 HMG-Y-related protein A3.5e-3351.08Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPL
        MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL  MK SG+LVF KNNY +   P APP+RGRGRPPK++ P 
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPL

Query:  PPSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ATTPAP---PAPSG-------RPRGRPPKVK
         P+     P   GR       PPK   P++  V   ++G  KPRGRP K  ++  A +P+P   PAP+G       R RGRPPKV+
Subjt:  PPSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ATTPAP---PAPSG-------RPRGRPPKVK

Arabidopsis top hitse value%identityAlignment
AT1G14900.1 high mobility group A3.5e-3651.38Show/hide
Query:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLS----
        SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+  KNNYMK DP APP+RGRGRPPK K+     +  +    
Subjt:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLS----

Query:  -------PPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQS-ATTPAPPAPSG------RPRGRPPKVKATL
               PP+ RGRPPK    P  P +P Q KV +G+G+PRGRP K P++ + T A P P+       R RGRPPKVK T+
Subjt:  -------PPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQS-ATTPAPPAPSG------RPRGRPPKVKATL

AT1G48620.1 high mobility group A51.1e-1335.29Show/hide
Query:  TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY-MKRDPTAPP--------------
        T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV  K +Y +   P  PP              
Subjt:  TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY-MKRDPTAPP--------------

Query:  ----------------------RRGRGRPPKSK----SPLPPSSGL----SPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAP
                              +RGRGRPPK+K     P P ++G         P  RP +    PP+ P   Q  V     +P GRPRK   S T    
Subjt:  ----------------------RRGRGRPPKSK----SPLPPSSGL----SPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAP

Query:  PAPSG-----RPRGRPPKVKA
         + SG     + RGRPP  +A
Subjt:  PAPSG-----RPRGRPPKVKA

AT3G18035.1 winged-helix DNA-binding transcription factor family protein4.3e-1032.69Show/hide
Query:  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY---------------------------------MKR
        PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   K +Y                                    
Subjt:  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY---------------------------------MKR

Query:  DPTA------PPRRGRGRPPKSK-----SPLPPSSGLSPPKPRGRP---PKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSG--RPR
        DP A      P +RGRGRPPK K      PL      +  +  G+P    +   +P   P PV      G G+PR      P +A        +G  + R
Subjt:  DPTA------PPRRGRGRPPKSK-----SPLPPSSGLSPPKPRGRP---PKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSG--RPR

Query:  GRPPKVKA
        GRPP  +A
Subjt:  GRPPKVKA

AT5G08780.1 winged-helix DNA-binding transcription factor family protein3.1e-0838.57Show/hide
Query:  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNN
        +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +    +++   NN
Subjt:  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACAAT
ATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGA
ACAACTACATGAAGAGGGATCCTACGGCACCTCCGCGACGAGGCCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACCCAGTTCTGGGTTATCTCCACCAAAGCCA
AGAGGCCGCCCGCCAAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCC
TCAGTCAGCAACCACACCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
GAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCTCCTTCTCTGTAGGCTTCAGGATAATAAAAGACCTTTCTTTTTTAGATTTTCAA
TGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACAATA
TCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAA
CAACTACATGAAGAGGGATCCTACGGCACCTCCGCGACGAGGCCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACCCAGTTCTGGGTTATCTCCACCAAAGCCAA
GAGGCCGCCCGCCAAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCT
CAGTCAGCAACCACACCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAGATTGTTGC
AGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTTTAGTGCTTAGTTTTAGTTTGATGTG
GATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTGTGAGGCTCTGTTGCTTTCTAATTTACAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTC
AATCCTTCAAACATTTTTGATTGCTTCGAACATGACACTTCACATTGTCTACTCTTTTTCCAAATGTCGGAAGGTGAAGCAATTGAATCAGTTAAGGTGTGCATAAATAG
TTATGAGTACTCATGGACATAGAAATAAAAAGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGAATTACTTTTGTCAATGGAAACAAGTTGTTTGT
TGGAATCGTACTAGTTGTACTTTTGAAGAGGGTTTGGAATTTAGACTCATCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTGTTTTGATGTAGTTTTAATTGG
ATAGATAGGGATTCATAGGACCATAGAGGTTTGGAAGATTTTG
Protein sequenceShow/hide protein sequence
MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKP
RGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ