CuGenDBv2

Gene ID	PI0018029
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 32
Genome location	chr11:27277497..27280679
RNA-Seq Expression	PI0018029
Synteny	PI0018029
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009631 - cold acclimation (biological process) GO:0010150 - leaf senescence (biological process) GO:0048364 - root development (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR033244 - Mediator of RNA polymerase II transcription subunit 32

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

5.3e-69

97.95

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+EDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

1.6e-68

97.26

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+ED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

XP_004148855.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus]

9.1e-69

97.95

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+EDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]

1.6e-68

97.26

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+ED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]

1.4e-69

98.63

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTG+PPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+EDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIN7 Uncharacterized protein

4.4e-69

97.95

Show/hide

Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+EDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 32

7.5e-69

97.26

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+ED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 32

2.6e-69

97.95

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+EDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 32

7.5e-69

97.26

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARF+ED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X2

4.6e-66

95.3

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TTGLPPIS
        MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA  TTGLPPIS
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHQSAPFDARFSEDATQ
        A+RLEQMSKAVRWLVIELQHGSG AAASASAHSH SAPFDARF+EDATQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHQSAPFDARFSEDATQ

SwissProt top hits

e value

%identity

Alignment

Q84VW5 Mediator of RNA polymerase II transcription subunit 32

5.0e-46

69.28

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA TG    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RFSED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.6e-47

69.28

Show/hide

Query:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA TG    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RFSED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

Sequences

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CDS sequence

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ATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAAC
AGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCC
TTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCTGTAAGA
TGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAATCTGCTCCTTTTGATGCTAGATTTTCTGAGGATGCAACCCAATA
G

mRNA sequence

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ATTTATTTAATTTGAAGAAATTAGGAAATCATACTTCCTCCCTTCTTCGCCATATTCCGATCTCAGTTGTCTCTCTCGACATCTCTCACTGTCTCGGCTCGCCAAGCCAC
AGCGTTGCCCACGCACGTCGCCGCCGCTCCGCTGCTGCACCTCCGTCCAACGTTCATCCAGCCCCGCAGTCTCGCTCCGGTATCTGATATGGACAGCCTAGTGGACTCTT
TAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTT
AAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTC
ACTGGCTGGCAAGTCTGGGCAGGCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCTGTAAGATGGCTCGTGATTGAGTTGCAGC
ACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAATCTGCTCCTTTTGATGCTAGATTTTCTGAGGATGCAACCCAATAGGTACCTATCTTATGAGGTTAT
AACGTAACAAGTTCTTGTTTTTGTGTTTTGCATGAAATGGATTTTTGGGTGGCGATGGGGCGTTTACTGTGTAAGATAATCGGCTTGAGCTTTGACTGAACATGAAAAAG
CGGATCCATTTGTTCTGTATCTATCGTTAACTAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTCCTTGGAGGTTTGGTGGGGAGAAATTGTCTCTAGTATATATAC
TTAATATGGTCAAAGCAAGTATGATTCTCTTAGACGAAATTAACGTTTTTTTGTTCATG

Protein sequence

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MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVR
WLVIELQHGSGAAASASAHSHQSAPFDARFSEDATQ

PI0018029 (gene) of Melon (PI 482460) v1 genome