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PI0018034 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018034
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:16013727..16014156
RNA-Seq ExpressionPI0018034
SyntenyPI0018034
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7021407.1 unnamed protein product [Microthlaspi erraticum]8.7e-2356.2Show/hide
Query:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNI-KSS
        MFQEQAR ER+ T+K  + CKL K SPVSPHV KM                ELA DL+LQSLP + DQFVM+YNM+ M K+LTELH MLK+ E NI K +
Subjt:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNI-KSS

Query:  LEVLMVQKGKNPKKRERDQGK
          VLMVQ GK  KK  +D+GK
Subjt:  LEVLMVQKGKNPKKRERDQGK

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]4.2e-3369.05Show/hide
Query:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMKILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKK
        MFQEQARQER NTIKAFVN KLAKGSPVSP+V KMK                   FVMSYNMH +EKSLT+LH MLKT +LNIK S EVLMVQKGKNPKK
Subjt:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMKILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKK

Query:  RERDQGKCRGKVAAKASKVDAHVAPR
        RERDQGK + KV  KASKVDA   PR
Subjt:  RERDQGKCRGKVAAKASKVDAHVAPR

KAA0063133.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-3767.91Show/hide
Query:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSL
        M QEQARQE+FN I  FVNCKL +GS VSPHV K+K               EL ID+VLQSLPD  DQFVMSYNMHGMEKSLT+LH MLK ++LNIKS+ 
Subjt:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSL

Query:  EVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA
        EVLMVQKGKNPKKR  DQGK  GKV  K SKVDA
Subjt:  EVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA

KAA0066400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.8e-2777.27Show/hide
Query:  ELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDAHVAPR
        +LAIDLVLQ +P+T DQFVM++NMHGME+SLTELH+MLK  ELNIKSS EVLMVQKGKNPKKRERDQG  +GKV  KAS+VDA  APR
Subjt:  ELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDAHVAPR

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.4e-2766.04Show/hide
Query:  AKGSPVSPHVFKMKI-LELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA
        A+ +      ++++I  EL IDLVLQSLPDT D++++SYNMHGM+KSLTELH MLKT +LNIKSS +VLM+QKGKNPKK+E DQGK +GKVA K SKVDA
Subjt:  AKGSPVSPHVFKMKI-LELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA

Query:  HVAPRP
          APRP
Subjt:  HVAPRP

TrEMBL top hitse value%identityAlignment
A0A5A7UN47 Uncharacterized protein2.0e-3369.05Show/hide
Query:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMKILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKK
        MFQEQARQER NTIKAFVN KLAKGSPVSP+V KMK                   FVMSYNMH +EKSLT+LH MLKT +LNIK S EVLMVQKGKNPKK
Subjt:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMKILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKK

Query:  RERDQGKCRGKVAAKASKVDAHVAPR
        RERDQGK + KV  KASKVDA   PR
Subjt:  RERDQGKCRGKVAAKASKVDAHVAPR

A0A5A7V4Y1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-3767.91Show/hide
Query:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSL
        M QEQARQE+FN I  FVNCKL +GS VSPHV K+K               EL ID+VLQSLPD  DQFVMSYNMHGMEKSLT+LH MLK ++LNIKS+ 
Subjt:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSL

Query:  EVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA
        EVLMVQKGKNPKKR  DQGK  GKV  K SKVDA
Subjt:  EVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-2766.04Show/hide
Query:  AKGSPVSPHVFKMKI-LELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA
        A+ +      ++++I  EL IDLVLQSLPDT D++++SYNMHGM+KSLTELH MLKT +LNIKSS +VLM+QKGKNPKK+E DQGK +GKVA K SKVDA
Subjt:  AKGSPVSPHVFKMKI-LELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDA

Query:  HVAPRP
          APRP
Subjt:  HVAPRP

A0A5D3BP05 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-2777.27Show/hide
Query:  ELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDAHVAPR
        +LAIDLVLQ +P+T DQFVM++NMHGME+SLTELH+MLK  ELNIKSS EVLMVQKGKNPKKRERDQG  +GKV  KAS+VDA  APR
Subjt:  ELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRGKVAAKASKVDAHVAPR

A0A6D2I0Z8 CCHC-type domain-containing protein4.2e-2356.2Show/hide
Query:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNI-KSS
        MFQEQAR ER+ T+K  + CKL K SPVSPHV KM                ELA DL+LQSLP + DQFVM+YNM+ M K+LTELH MLK+ E NI K +
Subjt:  MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMK-------------ILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNI-KSS

Query:  LEVLMVQKGKNPKKRERDQGK
          VLMVQ GK  KK  +D+GK
Subjt:  LEVLMVQKGKNPKKRERDQGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAAGAGCAAGCAAGACAAGAGAGGTTCAACACCATCAAAGCTTTTGTCAACTGCAAACTAGCTAAGGGTAGTCCAGTTAGCCCTCATGTTTTCAAGATGAAAAT
TCTTGAGCTTGCGATTGATTTGGTTCTCCAATCCCTGCCTGATACTTTGGATCAGTTTGTAATGAGTTACAACATGCATGGGATGGAGAAGAGTTTGACTGAGCTGCATC
AGATGCTAAAGACTACTGAGTTGAACATCAAGTCCAGCCTTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAAGTGTAGGGGT
AAAGTTGCTGCCAAGGCATCAAAAGTTGATGCTCATGTTGCACCTAGGCCCACCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAAGAGCAAGCAAGACAAGAGAGGTTCAACACCATCAAAGCTTTTGTCAACTGCAAACTAGCTAAGGGTAGTCCAGTTAGCCCTCATGTTTTCAAGATGAAAAT
TCTTGAGCTTGCGATTGATTTGGTTCTCCAATCCCTGCCTGATACTTTGGATCAGTTTGTAATGAGTTACAACATGCATGGGATGGAGAAGAGTTTGACTGAGCTGCATC
AGATGCTAAAGACTACTGAGTTGAACATCAAGTCCAGCCTTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAAGTGTAGGGGT
AAAGTTGCTGCCAAGGCATCAAAAGTTGATGCTCATGTTGCACCTAGGCCCACCCAATGA
Protein sequenceShow/hide protein sequence
MFQEQARQERFNTIKAFVNCKLAKGSPVSPHVFKMKILELAIDLVLQSLPDTLDQFVMSYNMHGMEKSLTELHQMLKTTELNIKSSLEVLMVQKGKNPKKRERDQGKCRG
KVAAKASKVDAHVAPRPTQ