CuGenDBv2

Gene ID	PI0018046
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	28S ribosomal protein
Genome location	chr11:6876792..6879051
RNA-Seq Expression	PI0018046
Synteny	PI0018046
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR032053 - Mitochondrial 28S ribosomal protein S34

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]

7.0e-69

94.52

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRTAISRALDF RLSSSF+RTFSSSSPSTSSSNPNASPTSSQTKRR KKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        G+AHKNG PI EAPKKISGVHKRCWKYIASLP SGES TSAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]

1.2e-68

93.84

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRTAISRALDF RLSSSFIRTF+SSSPSTSSSNPNASP+SSQTKRR KKKKNLFEV+QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        G+AHKNGMPI EAPKKISGVHKRCWKYIASLPR GES TSAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

XP_022944512.1 uncharacterized protein LOC111448948 [Cucurbita moschata]

2.5e-58

82.19

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        M+VANR+AIS AL F RLSSSF R+F++SSPS S+ NPNA   S++TKRR KKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        GVAHK+G  IAEAPKKISGVHKRCWKYIASLPRSG+S+ SAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]

3.2e-58

78.34

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRT ISRALDF RL+SSFIR FS+S+ STSSS+P+AS  +S+ KRR KKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRS-----------GESNTSAEVQTS
        G+AHKNG PIAEAPKKISGVHKRCWKYI SLPRS           GESN SAE QTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRS-----------GESNTSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]

4.0e-64

89.58

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Query:  VANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGV
        VANRTAISRALDF RLSS+FIRTFS+SSPSTSSSNPNAS  S++ KRR KKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYK+GTHGKAWG+
Subjt:  VANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGV

Query:  AHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        AHK+G PIAEAPKKISGVHKRCWKYIASLPRSGESN SAEVQTS
Subjt:  AHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KH76 Uncharacterized protein

3.4e-69

94.52

Show/hide

Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRTAISRALDF RLSSSF+RTFSSSSPSTSSSNPNASPTSSQTKRR KKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        G+AHKNG PI EAPKKISGVHKRCWKYIASLP SGES TSAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

A0A1S3CKN2 uncharacterized protein LOC103502049

5.7e-69

93.84

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRTAISRALDF RLSSSFIRTF+SSSPSTSSSNPNASP+SSQTKRR KKKKNLFEV+QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        G+AHKNGMPI EAPKKISGVHKRCWKYIASLPR GES TSAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

A0A5A7V0Y6 Uncharacterized protein

5.7e-69

93.84

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRTAISRALDF RLSSSFIRTF+SSSPSTSSSNPNASP+SSQTKRR KKKKNLFEV+QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        G+AHKNGMPI EAPKKISGVHKRCWKYIASLPR GES TSAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

A0A6J1FVV3 uncharacterized protein LOC111448948

1.2e-58

82.19

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        M+VANR+AIS AL F RLSSSF R+F++SSPS S+ NPNA   S++TKRR KKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        GVAHK+G  IAEAPKKISGVHKRCWKYIASLPRSG+S+ SAEVQTS
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

A0A6J1G714 uncharacterized protein LOC111451448

1.6e-58

78.34

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Query:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW
        MAVANRT ISRALDF RL+SSFIR FS+S+ STSSS+P+AS  +S+ KRR KKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAW
Subjt:  MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAW

Query:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRS-----------GESNTSAEVQTS
        G+AHKNG PIAEAPKKISGVHKRCWKYI SLPRS           GESN SAEVQ+S
Subjt:  GVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRS-----------GESNTSAEVQTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G52370.1 unknown protein

3.8e-41

56.08

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Query:  MAVANRTAISR--ALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGK
        M + NR AISR   +  +RLS + +R FS++  S        +P+S  +K +++KKKNL EV QFLPNWG+GYH+AK+HW+ ISY+ITKINLYK G HGK
Subjt:  MAVANRTAISR--ALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGK

Query:  AWGVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        AWG+ HK+G+  AEAPKKISGVHKRCWKYI +L ++  + TSA VQ +
Subjt:  AWGVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

AT5G58990.1 unknown protein

5.9e-42

56.76

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Query:  MAVANRTAISR--ALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGK
        M + NR AISR   +  + LS S +R F S++PS +S+  + +P+S   K +++KKKNL EV QFLPNWG+GYH+AK+HW+ ISY+ITKINLYK G HGK
Subjt:  MAVANRTAISR--ALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGK

Query:  AWGVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS
        AWG+ HK+G+  AEAPKKISGVHKRCWKYI +L ++  + T+A+VQ +
Subjt:  AWGVAHKNGMPIAEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTATAGGTTATCTTCTTCCTTTATTAGAACCTTCAGCTCCTCTTCGCCCTCAACCTCCTCTTCCAA
CCCCAATGCCTCGCCTACTTCGTCTCAAACCAAACGGAGGAAGAAGAAGAAGAAGAACCTCTTCGAAGTAGTTCAGTTCTTGCCCAATTGGGGAGTTGGATACCATGTCG
CCAAATCTCACTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCACGCACGGCAAGGCATGGGGCGTTGCTCATAAAAATGGCATGCCGATT
GCCGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGTTGCTGGAAATATATCGCTAGCTTGCCAAGATCGGGAGAAAGCAACACATCAGCTGAAGTTCAAACTTCATG
A

mRNA sequence

Show/hide mRNA sequence

CCGAAAATTACCCCTTTCCATTTTGCTAAACCCTGCTAGAGAGAACTGCGAAATAGCGATTCAAAGGGAAGCCCACAACCAAACCTAGAGAGAGAGAGGGACGCCAATGG
CTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTATAGGTTATCTTCTTCCTTTATTAGAACCTTCAGCTCCTCTTCGCCCTCAACCTCCTCTTCCAACCCC
AATGCCTCGCCTACTTCGTCTCAAACCAAACGGAGGAAGAAGAAGAAGAAGAACCTCTTCGAAGTAGTTCAGTTCTTGCCCAATTGGGGAGTTGGATACCATGTCGCCAA
ATCTCACTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCACGCACGGCAAGGCATGGGGCGTTGCTCATAAAAATGGCATGCCGATTGCCG
AAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGTTGCTGGAAATATATCGCTAGCTTGCCAAGATCGGGAGAAAGCAACACATCAGCTGAAGTTCAAACTTCATGACTG
CAGAGAAATCTCAGTTGCTGATTCTTTTTGGCCAACCTTATTTCCTGGTTCAAAGAGTTCTAATCTCTCCAGAGTAGTGGTCCTTAAACGTAGTCAGGTTTTCTTCTGTG
CTATTTTACTTGCTTTCATTAGCAAAGAAAGATCAATCATCCGAATTAAGTGTTAAGTTTGTTATCTATTCTCAATTACTGGTGGGTTTTCATGTTTAATAGAGGTTGAA
GAATCTAGTTTTATATTTGCGGATCTGTGTGCTTTGTCTGCTGTGAGATGAATAACAACCATCTTTCCTTCTTGGAACATGAAGTTTAGTGTTTATTTTTCTTTGGGTGG
GGGGAAATTGCATAAACCACCCCAAACTATGAGAACAATCACACCTATGAATTTTGAATTTCAGTCGTTATTAATGATCAAACTAATATTTATTTATGAATAACTCACAC
AATAATGATAAGGGGCAACCATTAACAAATTATTTGGATAA

Protein sequence

Show/hide protein sequence

MAVANRTAISRALDFYRLSSSFIRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGVAHKNGMPI
AEAPKKISGVHKRCWKYIASLPRSGESNTSAEVQTS

PI0018046 (gene) of Melon (PI 482460) v1 genome