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PI0018065 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018065
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:17687924..17689135
RNA-Seq ExpressionPI0018065
SyntenyPI0018065
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041264.1 hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa]3.5e-3040Show/hide
Query:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK
        VV  FY A +N +E   E+  K V F  +AIN LY L NN   +GH    +P  +  ++ALE I WP T W+  PT KYQL P+ L T+ SVWL FIKK 
Subjt:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK

Query:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIPGGLCSPMALNRVITLHAHQEMERRLK
        I PTRHD+TI++E  MLLYY         + +    +++W++ P G  PF    + L +K  P L    Q+ +  G+C    L+R IT+H ++   R L+
Subjt:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIPGGLCSPMALNRVITLHAHQEMERRLK

KAA0047856.1 hypothetical protein E6C27_scaffold133G001210 [Cucumis melo var. makuwa]2.6e-2541.4Show/hide
Query:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK
        +V  FY   +N +E   E+ GK ++F    IN +Y L NN   LGH    +P  +  +EALE   W  T W+  PT  YQL PH LTT+ASVWL FIKK 
Subjt:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK

Query:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEAL
        I PT HDN I++E  MLLYYI+ +  VN+  +I   + + ++ P+    F   ++ L
Subjt:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEAL

KAA0049609.1 transposase [Cucumis melo var. makuwa]3.4e-2541.72Show/hide
Query:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML
        +  + V F  E IN+LYDL N++    G   +V   +   ++ +++I WP+     TPT + QL PHQLT +A+VWLFFIKKKIFPT HD+TI  E  ++
Subjt:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML

Query:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS
        LY I  K   NL  ++    LSWM+ PK   PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-3445.76Show/hide
Query:  MGVVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTG-KYQLHPHQLTTKASVWLFFI
        M VV KFY  K N  +  + I  +   F  E IN+LY+  N+ E LG E V    K   +EAL+V+AWP    E+ P   +YQL+PH LTTKA+VW+FF 
Subjt:  MGVVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTG-KYQLHPHQLTTKASVWLFFI

Query:  KKKIFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIP
        K KIFPT +D+TI+++  ++LY I+ K  +NLD +I   IL+WM+ PK  MPFPS +E LC+K +P L    +  IP
Subjt:  KKKIFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIP

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]3.4e-2541.72Show/hide
Query:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML
        +  + V F  E IN+LYDL N++    G   +V   +   ++ +++I WP+     TPT + QL PHQLT +A+VWLFFIKKKIFPT HD+TI  E  ++
Subjt:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML

Query:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS
        LY I  K   NL  ++    LSWM+ PK   PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS

TrEMBL top hitse value%identityAlignment
A0A5A7U0U4 Uncharacterized protein1.3e-2541.4Show/hide
Query:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK
        +V  FY   +N +E   E+ GK ++F    IN +Y L NN   LGH    +P  +  +EALE   W  T W+  PT  YQL PH LTT+ASVWL FIKK 
Subjt:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK

Query:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEAL
        I PT HDN I++E  MLLYYI+ +  VN+  +I   + + ++ P+    F   ++ L
Subjt:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEAL

A0A5A7U806 Transposase1.7e-2541.72Show/hide
Query:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML
        +  + V F  E IN+LYDL N++    G   +V   +   ++ +++I WP+     TPT + QL PHQLT +A+VWLFFIKKKIFPT HD+TI  E  ++
Subjt:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML

Query:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS
        LY I  K   NL  ++    LSWM+ PK   PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS

A0A5A7V6M5 Gag/pol protein8.8e-3545.76Show/hide
Query:  MGVVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTG-KYQLHPHQLTTKASVWLFFI
        M VV KFY  K N  +  + I  +   F  E IN+LY+  N+ E LG E V    K   +EAL+V+AWP    E+ P   +YQL+PH LTTKA+VW+FF 
Subjt:  MGVVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTG-KYQLHPHQLTTKASVWLFFI

Query:  KKKIFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIP
        K KIFPT +D+TI+++  ++LY I+ K  +NLD +I   IL+WM+ PK  MPFPS +E LC+K +P L    +  IP
Subjt:  KKKIFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIP

A0A5D3CVL7 Uncharacterized protein1.7e-2541.72Show/hide
Query:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML
        +  + V F  E IN+LYDL N++    G   +V   +   ++ +++I WP+     TPT + QL PHQLT +A+VWLFFIKKKIFPT HD+TI  E  ++
Subjt:  ISGKTVSFRAEAINDLYDLSNNVETL-GHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDNTINLESKML

Query:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS
        LY I  K   NL  ++    LSWM+ PK   PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVV-PFLCAVNQMPIPGGLCS

A0A5D3CW17 Uncharacterized protein1.7e-3040Show/hide
Query:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK
        VV  FY A +N +E   E+  K V F  +AIN LY L NN   +GH    +P  +  ++ALE I WP T W+  PT KYQL P+ L T+ SVWL FIKK 
Subjt:  VVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKK

Query:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIPGGLCSPMALNRVITLHAHQEMERRLK
        I PTRHD+TI++E  MLLYY         + +    +++W++ P G  PF    + L +K  P L    Q+ +  G+C    L+R IT+H ++   R L+
Subjt:  IFPTRHDNTINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIPGGLCSPMALNRVITLHAHQEMERRLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGGTCAAGAAGTTTTACGCCGCTAAACTGAATGCTGATGAGTTTAGCGTAGAGATTAGTGGGAAGACGGTGAGCTTCCGCGCGGAGGCCATCAACGACCTATA
CGACCTGTCCAATAATGTTGAAACGCTTGGGCATGAGTATGTGGTCAGTCCAATGAAGAAAACAACCCGTGAAGCATTGGAGGTCATCGCCTGGCCTAAGACAACATGGG
AAATTACGCCAACTGGGAAATATCAACTTCACCCACACCAACTGACTACTAAAGCAAGTGTGTGGTTGTTCTTCATAAAAAAGAAGATATTTCCCACACGCCATGACAAT
ACCATTAATTTGGAATCTAAGATGCTGTTGTACTACATCCTAAAGAAATGGTGCGTGAACCTCGACAATCTCATAGCTACCACCATCCTTTCTTGGATGCAAGCTCCCAA
GGGCGTCATGCCCTTCCCATCCACTGTAGAGGCACTCTGCGTGAAGGTCGTCCCTTTTCTTTGCGCCGTCAACCAAATGCCCATTCCAGGCGGCCTATGCAGCCCAATGG
CTTTGAATCGCGTGATTACTCTCCACGCCCACCAAGAAATGGAGAGGAGGTTAAAGACACTGGACCAAGACATAGAAGAAGAGGGCGAGACTCAAGCAGACCCCCGCAAA
AGAAAAGCCCCCAGCACCACATCAAACCAAAAGAACTCCCACAAAAATCCAAAAAGAACCCAACTTCTCTCCACCTTCCAGCCTTTCTTCGCTCATCCTATCTCCTCGTC
TGTCACCTCTCCCTCGCATTCCTTCACCCGTATGATCTTCCCGCCTTCCTTCCCCCAAACTCATAAAAACCACATCTCCCAAACTTCCACAATTCCTTCCCCTAGGCGAG
CTGATACTTTAGCACCTCTAAACCTATCGTCCATCCTGGACCTTTCCAACCTTTCCAATGACCCACTCGCAGTCGTCACTGAGGTCATTGAGGTACCCCCACCAACCATC
ACCCCCATAGGCCCTCAGCCGCATTCCTCTCCCATTCTTATCATTTCTGAGGAGGACGCCAACCCTAAAGATGGGAACGCCAAACAACCATCACCCATTTTGGATACAGG
AGACCGCGTTGATGATCCACTCATCAAGGAAAAAACACTTGTCCTTGACGACGTGATAACTTGTAGAAATGCAAGTTATTGCAACCTTTTAGGTAGAATAATGAAAATAT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGGTCAAGAAGTTTTACGCCGCTAAACTGAATGCTGATGAGTTTAGCGTAGAGATTAGTGGGAAGACGGTGAGCTTCCGCGCGGAGGCCATCAACGACCTATA
CGACCTGTCCAATAATGTTGAAACGCTTGGGCATGAGTATGTGGTCAGTCCAATGAAGAAAACAACCCGTGAAGCATTGGAGGTCATCGCCTGGCCTAAGACAACATGGG
AAATTACGCCAACTGGGAAATATCAACTTCACCCACACCAACTGACTACTAAAGCAAGTGTGTGGTTGTTCTTCATAAAAAAGAAGATATTTCCCACACGCCATGACAAT
ACCATTAATTTGGAATCTAAGATGCTGTTGTACTACATCCTAAAGAAATGGTGCGTGAACCTCGACAATCTCATAGCTACCACCATCCTTTCTTGGATGCAAGCTCCCAA
GGGCGTCATGCCCTTCCCATCCACTGTAGAGGCACTCTGCGTGAAGGTCGTCCCTTTTCTTTGCGCCGTCAACCAAATGCCCATTCCAGGCGGCCTATGCAGCCCAATGG
CTTTGAATCGCGTGATTACTCTCCACGCCCACCAAGAAATGGAGAGGAGGTTAAAGACACTGGACCAAGACATAGAAGAAGAGGGCGAGACTCAAGCAGACCCCCGCAAA
AGAAAAGCCCCCAGCACCACATCAAACCAAAAGAACTCCCACAAAAATCCAAAAAGAACCCAACTTCTCTCCACCTTCCAGCCTTTCTTCGCTCATCCTATCTCCTCGTC
TGTCACCTCTCCCTCGCATTCCTTCACCCGTATGATCTTCCCGCCTTCCTTCCCCCAAACTCATAAAAACCACATCTCCCAAACTTCCACAATTCCTTCCCCTAGGCGAG
CTGATACTTTAGCACCTCTAAACCTATCGTCCATCCTGGACCTTTCCAACCTTTCCAATGACCCACTCGCAGTCGTCACTGAGGTCATTGAGGTACCCCCACCAACCATC
ACCCCCATAGGCCCTCAGCCGCATTCCTCTCCCATTCTTATCATTTCTGAGGAGGACGCCAACCCTAAAGATGGGAACGCCAAACAACCATCACCCATTTTGGATACAGG
AGACCGCGTTGATGATCCACTCATCAAGGAAAAAACACTTGTCCTTGACGACGTGATAACTTGTAGAAATGCAAGTTATTGCAACCTTTTAGGTAGAATAATGAAAATAT
AA
Protein sequenceShow/hide protein sequence
MGVVKKFYAAKLNADEFSVEISGKTVSFRAEAINDLYDLSNNVETLGHEYVVSPMKKTTREALEVIAWPKTTWEITPTGKYQLHPHQLTTKASVWLFFIKKKIFPTRHDN
TINLESKMLLYYILKKWCVNLDNLIATTILSWMQAPKGVMPFPSTVEALCVKVVPFLCAVNQMPIPGGLCSPMALNRVITLHAHQEMERRLKTLDQDIEEEGETQADPRK
RKAPSTTSNQKNSHKNPKRTQLLSTFQPFFAHPISSSVTSPSHSFTRMIFPPSFPQTHKNHISQTSTIPSPRRADTLAPLNLSSILDLSNLSNDPLAVVTEVIEVPPPTI
TPIGPQPHSSPILIISEEDANPKDGNAKQPSPILDTGDRVDDPLIKEKTLVLDDVITCRNASYCNLLGRIMKI