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PI0018112 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018112
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:18131710..18132162
RNA-Seq ExpressionPI0018112
SyntenyPI0018112
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035629.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-3454.05Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        PAGYD FPA    D  F +MYS GL++SPD +M TR  R+SE R  SSGSKRKR G A +  +I+R+ +EY N+QL  IAEWP  QR DA+ TR ++VRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I +L  ++  R M I+MRNVDDM+AFL++ + +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-3656.76Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        PAGYD F A    DM+F  MY+QGL++S D +MGTR   + E R  SSGSKRKR G + +  +IIR+ +EY N+QL  IAEWP  QR DA+ TR +VVRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I EL  ++  R MRI+MRNVDDM+AFLD+PN +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-3757.43Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        PAGYD F A D +D +FL MYS GL++SPD +M TR  R+SE R  SSGSKRKR G A +  +I+R+ MEY N+QL  IAEWP  QR DA  TR ++VRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I EL  ++  R MRI+MRNVDDM+AFL++P+ +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-4465.77Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        P GY+GF A DGNDME   MYSQG+D+  D IMGTRP R +EGR GSSGSKRK+GGQA E  EIIR+ ME++ND+LKAI EW   QR DA+    +VVRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNNA
        LQ I EL+R + VR M+I+M NVDDM+AFLDI +ELKLDYCTII Q+NA
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNNA

KAA0065892.1 retrotransposon protein [Cucumis melo var. makuwa]7.5e-3454.73Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        P GYD F A    D +F  MYS GL++SPD +M TR  R+SE R  SSGSKRKR G A +  +I+R+ +EY N+QL  IAEWP  QR DA  TR ++VRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I EL  ++  R MRI+MRNVDDM+AFL++P+ +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein3.6e-3454.05Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        P GYD F A    D +F  MYS GL++SPD +M TR  R+SE R  SSGSKRKR G A +  +I+R+ +EY N+QL  IAEWP  QR DA  TR ++V+Q
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I EL  ++  R MRI+MRNVDDM+AFL++P+ +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

A0A5A7TDD6 Retrotransposon protein3.9e-3656.76Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        PAGYD F A    DM+F  MY+QGL++S D +MGTR   + E R  SSGSKRKR G + +  +IIR+ +EY N+QL  IAEWP  QR DA+ TR +VVRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I EL  ++  R MRI+MRNVDDM+AFLD+PN +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

A0A5A7TYQ6 Retrotransposon protein1.6e-3757.43Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        PAGYD F A D +D +FL MYS GL++SPD +M TR  R+SE R  SSGSKRKR G A +  +I+R+ MEY N+QL  IAEWP  QR DA  TR ++VRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I EL  ++  R MRI+MRNVDDM+AFL++P+ +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

A0A5A7V469 Retrotransposon protein3.0e-4465.77Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        P GY+GF A DGNDME   MYSQG+D+  D IMGTRP R +EGR GSSGSKRK+GGQA E  EIIR+ ME++ND+LKAI EW   QR DA+    +VVRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNNA
        LQ I EL+R + VR M+I+M NVDDM+AFLDI +ELKLDYCTII Q+NA
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNNA

A0A5D3E474 Retrotransposon protein1.6e-3454.05Show/hide
Query:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ
        PAGYD FPA    D  F +MYS GL++SPD +M TR  R+SE R  SSGSKRKR G A +  +I+R+ +EY N+QL  IAEWP  QR DA+ TR ++VRQ
Subjt:  PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQ

Query:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN
        L+ I +L  ++  R M I+MRNVDDM+AFL++ + +K  YC+IILQ N
Subjt:  LQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCAGGATACGATGGATTTCCCGCTTATGACGGGAATGATATGGAGTTCCTCACGATGTACAGTCAGGGACTGGACATATCACCTGACAGCATCATGGGCACACG
ACCCGGTCGATTATCTGAGGGTAGGGCTGGTTCAAGCGGTTCGAAGAGGAAACGTGGAGGGCAGGCGTTCGAGATGGCAGAAATTATTCGCAGTACCATGGAATATGCGA
ATGACCAGCTAAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTCAGATGCAAACGTGACACGTGCGAAAGTCGTTAGACAACTGCAGGGAATCTTGGAGCTGAACAGA
CTAAACATGGTTCGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGGAAGCATTTCTGGACATCCCAAACGAGCTTAAATTGGATTACTGCACGATCATTCTCCA
AAATAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCAGGATACGATGGATTTCCCGCTTATGACGGGAATGATATGGAGTTCCTCACGATGTACAGTCAGGGACTGGACATATCACCTGACAGCATCATGGGCACACG
ACCCGGTCGATTATCTGAGGGTAGGGCTGGTTCAAGCGGTTCGAAGAGGAAACGTGGAGGGCAGGCGTTCGAGATGGCAGAAATTATTCGCAGTACCATGGAATATGCGA
ATGACCAGCTAAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTCAGATGCAAACGTGACACGTGCGAAAGTCGTTAGACAACTGCAGGGAATCTTGGAGCTGAACAGA
CTAAACATGGTTCGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGGAAGCATTTCTGGACATCCCAAACGAGCTTAAATTGGATTACTGCACGATCATTCTCCA
AAATAACGCTTGA
Protein sequenceShow/hide protein sequence
MPAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNR
LNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNNA