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PI0018130 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018130
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:12089657..12091129
RNA-Seq ExpressionPI0018130
SyntenyPI0018130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]4.5e-5272.06Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G  +KV KCGVC L GHPNDKC +++E+ N++RKYDP+GNTYN+GWRDNPNL WG DNQ+  QA  +S+NQGTNLED++KALA+NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.9e-5372.79Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G   KV KCGVCGL GHPNDKCL ++E+ N++R+YDPH NTYN+GWRDNPNL WG DNQ+  QA S+S+NQGTNLED++KAL +NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5271.32Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G  +KV KCGVCGL GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNL WG DNQ+  QA  +S+NQGTNLED++KALA+NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-5272.06Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G   KV KCGVCGL GHPNDKC +++E+ N++R+YDPHGNTYN GWRD PNL WG D Q   QA S+S+NQGTNLED++KAL +NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5271.32Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G  +KV KCGVCGL GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNL WG DNQ+  QA  +S+NQGTNLED++KALA+NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein3.3e-5372.79Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G   KV KCGVCGL GHPNDKCL ++E+ N++R+YDPH NTYN+GWRDNPNL WG DNQ+  QA S+S+NQGTNLED++KAL +NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

A0A5A7V594 Retrotransposon gag protein1.3e-5271.32Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G  +KV KCGVCGL GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNL WG DNQ+  QA  +S+NQGTNLED++KALA+NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

A0A5D3CFE7 Retrotransposon gag protein2.8e-5272.06Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G   KV KCGVCGL GHPNDKC +++E+ N++R+YDPHGNTYN GWRD PNL WG D Q   QA S+S+NQGTNLED++KAL +NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

A0A5D3DS57 Retrotransposon gag protein1.3e-5271.32Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G  +KV KCGVCGL GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNL WG DNQ+  QA  +S+NQGTNLED++KALA+NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

E5GBZ4 Retrotransposon gag protein2.2e-5272.06Show/hide
Query:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL
        G  +KV KCGVC L GHPNDKC +++E+ N++RKYDP+GNTYN+GWRDNPNL WG DNQ+  QA  +S+NQGTNLED++KALA+NT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP
        T AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTATTTGGACATCCTAATGACAAGTGTCTTGACCTTGTGGAAGAGGC
AAATGTCATTAGAAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCTAACCTTGGATGGGGAAAAGATAACCAACGACCCGCACAAGCAACTT
CATCTTCAAATAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCAAGTAATACAATTTCTTTTCAAAATGAAATGAAACAACAAATATCTCAATTAACAAAT
GCAATAAGCAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCAAATGTAAGTGCCATCTCGCTCAGAAGCGGTAAGACTCTGGAAACCCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTATTTGGACATCCTAATGACAAGTGTCTTGACCTTGTGGAAGAGGC
AAATGTCATTAGAAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCTAACCTTGGATGGGGAAAAGATAACCAACGACCCGCACAAGCAACTT
CATCTTCAAATAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCAAGTAATACAATTTCTTTTCAAAATGAAATGAAACAACAAATATCTCAATTAACAAAT
GCAATAAGCAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCAAATGTAAGTGCCATCTCGCTCAGAAGCGGTAAGACTCTGGAAACCCCTTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGGSVKVAKCGVCGLFGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLGWGKDNQRPAQATSSSNNQGTNLEDLVKALASNTISFQNEMKQQISQLTN
AISKLEGKGKLPAQPDHANVSAISLRSGKTLETP