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PI0018139 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018139
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:25094843..25096375
RNA-Seq ExpressionPI0018139
SyntenyPI0018139
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.5e-5567.92Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRW ND Q+  QA   S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T AISK++GKGKLPAQPD+ANV+AISLRSGKIL+TP + E+KV S    L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-5567.3Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRW ND Q+  QA   S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T  ISK++GKGKL AQPDHANV+ ISLRS KIL+TP + E+KV S P  L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-5567.92Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRW ND Q+  QA S S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T AISK++GKGKLPAQ DHANV+AISLRSGKIL+TP + E+KV S P  L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-5569.03Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRW ND Q+  QA S S+NQG+NLED++KALATN +SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        SK++GKGKLPAQPDHANV+AISLRSGKIL+TP + E+K+ S P  L  +N+ KEE
Subjt:  SKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]5.0e-5567.3Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRW ND Q+  QA   S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T  ISK++GKGKL AQPDHANV+ ISLRS KIL+TP + E+KV S P  L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.4e-5567.3Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRW ND Q+  QA   S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T  ISK++GKGKL AQPDHANV+ ISLRS KIL+TP + E+KV S P  L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

A0A5A7VQ60 Retrotransposon gag protein1.9e-5567.92Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRW ND Q+  QA S S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T AISK++GKGKLPAQ DHANV+AISLRSGKIL+TP + E+KV S P  L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

A0A5D3CB46 Retrotransposon gag protein1.4e-5569.03Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRW ND Q+  QA S S+NQG+NLED++KALATN +SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        SK++GKGKLPAQPDHANV+AISLRSGKIL+TP + E+K+ S P  L  +N+ KEE
Subjt:  SKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

A0A5D3CFE7 Retrotransposon gag protein3.2e-5572.34Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRW ND Q   QA S S+NQG+NLED++KAL TN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPSEEK
        T AISK++GKGKLPAQPDHANV+AISLRSGKIL+TP ++EK
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPSEEK

A0A5D3DCG3 Retrotransposon gag protein2.4e-5567.3Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRW ND Q+  QA   S+NQG+NLED++KALATN +SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE
        T  ISK++GKGKL AQPDHANV+ ISLRS KIL+TP + E+KV S P  L  +N+ KEE
Subjt:  TNAISKLEGKGKLPAQPDHANVNAISLRSGKILETPPS-EEKVPSNPTLLVDENKKKEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGAAAATGACGCCCAACGACCCGCACAAGCAACTT
CACCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTGAAAGCTCTTGCTACTAACATAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCGGCTCAACCCGATCACGCAAATGTAAATGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGCGA
AGAAAAGGTACCATCTAACCCTACCCTTCTAGTAGATGAAAATAAGAAAAAAGAAGAAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGAAAATGACGCCCAACGACCCGCACAAGCAACTT
CACCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTGAAAGCTCTTGCTACTAACATAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCGGCTCAACCCGATCACGCAAATGTAAATGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGCGA
AGAAAAGGTACCATCTAACCCTACCCTTCTAGTAGATGAAAATAAGAAAAAAGAAGAAATTTAG
Protein sequenceShow/hide protein sequence
MAPLSGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWENDAQRPAQATSPSNNQGSNLEDLVKALATNIISFQNEMKQQMSQLTN
AISKLEGKGKLPAQPDHANVNAISLRSGKILETPPSEEKVPSNPTLLVDENKKKEEI