CuGenDBv2

Gene ID	PI0018176
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	pentatricopeptide repeat-containing protein At2g15690
Genome location	chr01:414081..415144
RNA-Seq Expression	PI0018176
Synteny	PI0018176
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031291.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

2.6e-71

81.48

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRR R PI VSSFFKVRYPLS  FTFT  NQTETLIKTLSTSAIP+DFSNFPS PQQ SSSSPPYRQPQWGSPSQVNP SEN N QSFSEFQN 
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS
        D AQQG         SQHQSPQPNPGFS +GQS+TQVG  NSW PP+QSYPQYQNPSQPNPP QSYPQYQ PSQPSPP QSYPQYQNPS
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS

KAE8645866.1 hypothetical protein Csa_017177 [Cucumis sativus]

1.2e-63

79.89

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRRAR PI VSS FKVRYPLS  FTFT  NQTETLIKTLSTSAIPNDFSNFPS PQQ SSSSP YRQPQWGSPSQVNP SEN N+QSFSEFQNR
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS
        D AQQG         SQHQSPQPNPGFS QGQS++QVG  NSW PP+QS  QYQNPSQP PP QS+PQYQNPSQP PP QSYPQYQNPS
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS

XP_008454941.1 PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Cucumis melo]

1.2e-71

81.48

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRR R PI VSSFFKVRYPLS  FTFT  NQTETLIKTLSTSAIP+DFSNFPS PQQ SSSSPPYRQPQWGSPSQVNP SEN N QSFSEFQN 
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS
        D AQQG         SQHQSPQPNPGFS +GQS+TQVG  NSW PP+QSYPQYQNPSQPNPP QSYPQYQNPSQP+PP QSYPQYQNPS
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS

XP_031744652.1 pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Cucumis sativus]

1.2e-63

79.89

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRRAR PI VSS FKVRYPLS  FTFT  NQTETLIKTLSTSAIPNDFSNFPS PQQ SSSSP YRQPQWGSPSQVNP SEN N+QSFSEFQNR
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS
        D AQQG         SQHQSPQPNPGFS QGQS++QVG  NSW PP+QS  QYQNPSQP PP QS+PQYQNPSQP PP QSYPQYQNPS
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS

XP_038887834.1 pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Benincasa hispida]

1.6e-52

65.82

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMA RRAR PI +SSFFKVR PL  RFTFTCG+QT+TLIK LSTSAIPNDFSNFP PPQQ SSS P YRQ Q G  SQV+P + N N QSFSEFQNR
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQIK
        D  QQG         SQ+QSPQPNPGFS QGQ +TQ GNPNSW PP+QSYPQYQNPSQPNP    Y Q + P+Q +   Q YPQ   P  R  Q++
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6L3 DYW_deaminase domain-containing protein

3.3e-64

74.38

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRRAR PI VSS FKVRYPLS  FTFT  NQTETLIKTLSTSAIPNDFSNFPS PQQ SSSSP YRQPQWGSPSQVNP SEN N+QSFSEFQNR
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWK--------------PPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQ
        D AQQG         SQHQSPQPNPGFS QGQS++QVG  NSW               PP+QS+PQYQNPSQP PP QSYPQYQNPSQP+ P Q YPQYQ
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWK--------------PPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQ

Query:  NPS
        NPS
Subjt:  NPS

A0A1S3BZP9 pentatricopeptide repeat-containing protein At2g15690

5.7e-72

81.48

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRR R PI VSSFFKVRYPLS  FTFT  NQTETLIKTLSTSAIP+DFSNFPS PQQ SSSSPPYRQPQWGSPSQVNP SEN N QSFSEFQN 
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS
        D AQQG         SQHQSPQPNPGFS +GQS+TQVG  NSW PP+QSYPQYQNPSQPNPP QSYPQYQNPSQP+PP QSYPQYQNPS
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS

A0A5D3C491 Pentatricopeptide repeat-containing protein

1.3e-71

81.48

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRR R PI VSSFFKVRYPLS  FTFT  NQTETLIKTLSTSAIP+DFSNFPS PQQ SSSSPPYRQPQWGSPSQVNP SEN N QSFSEFQN 
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS
        D AQQG         SQHQSPQPNPGFS +GQS+TQVG  NSW PP+QSYPQYQNPSQPNPP QSYPQYQ PSQPSPP QSYPQYQNPS
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPS

A0A6J1GL94 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like

6.5e-52

64.95

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRR R PI +SSF KVR PL   FTF+CGN+TETLIK LSTSA P+DFSNFP+PPQQ SSS P Y Q QWGSPSQV+  S N N QSFSEFQNR
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQ
        D  QQG         SQ+QS  PNPGF  QGQS+TQ GNPNSW PP+QSYPQYQNPSQPNP   +Y Q + P+Q S   Q  PQ+  P  R LQ
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQ

A0A6J1I4R8 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like

8.0e-50

64.43

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Query:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR
        MA LMAVRR R PI +SSF KVR PL   FTF+CGNQTETLIK LSTSA P+DFSNFP+PPQQ SSS P Y Q Q GSPSQV+  S N N QSFSEFQNR
Subjt:  MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNR

Query:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQ
        D  Q G         SQ+QS  PNPGF  QGQS+TQ GNPNSW PP+QSYPQYQNPSQPNP   +Y Q + P+Q S   Q  PQ+  P  R LQ
Subjt:  DNAQQG---------SQHQSPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGTGTCTCATGGCTGTCCGGCGTGCTCGAAACCCCATTTTTGTCTCCTCCTTCTTCAAGGTACGGTATCCTCTCTCTTTTCGTTTCACTTTCACTTGTGGAAACCA
GACGGAGACACTAATCAAAACCCTAAGCACCTCGGCAATTCCTAACGATTTCTCTAATTTTCCTTCTCCACCGCAACAACGTTCTTCGTCTAGCCCTCCATATCGTCAGC
CGCAGTGGGGCTCGCCGAGCCAGGTTAATCCTACGAGTGAAAATCTTAATTACCAGTCGTTCTCGGAGTTTCAGAATCGTGATAATGCTCAGCAGGGAAGTCAGCATCAG
AGCCCTCAACCCAATCCTGGATTTTCCGGGCAGGGTCAGAGCCATACTCAAGTCGGTAACCCTAATTCGTGGAAACCTCCACATCAAAGCTACCCTCAATATCAAAATCC
TTCGCAGCCGAACCCTCCAAAACAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAGCCCTCCAAAACAAAGCTACCCTCAATATCAAAATCCTTCGCACCGAACCC
TCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACTCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATTTCAATT
ATCAGCAACAAAGAGGCCCTAACCAGTGGAACAATCAAAATCAAGGACACCAACAATTTGAAAGGCCGGAACATCGGAACCCACAAGCAGAGGATTCTAACCAGTTGA

mRNA sequence

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TTCCAAATACTTTTGTCTAATTTTCGTCTACTGCTCACAAGCTTTCAGTAACTGAGGTTTCTCTGAACCTTTCCTTAGGGTTTAGGCCTTTTCCGATCAAGAAATGGCGT
GTCTCATGGCTGTCCGGCGTGCTCGAAACCCCATTTTTGTCTCCTCCTTCTTCAAGGTACGGTATCCTCTCTCTTTTCGTTTCACTTTCACTTGTGGAAACCAGACGGAG
ACACTAATCAAAACCCTAAGCACCTCGGCAATTCCTAACGATTTCTCTAATTTTCCTTCTCCACCGCAACAACGTTCTTCGTCTAGCCCTCCATATCGTCAGCCGCAGTG
GGGCTCGCCGAGCCAGGTTAATCCTACGAGTGAAAATCTTAATTACCAGTCGTTCTCGGAGTTTCAGAATCGTGATAATGCTCAGCAGGGAAGTCAGCATCAGAGCCCTC
AACCCAATCCTGGATTTTCCGGGCAGGGTCAGAGCCATACTCAAGTCGGTAACCCTAATTCGTGGAAACCTCCACATCAAAGCTACCCTCAATATCAAAATCCTTCGCAG
CCGAACCCTCCAAAACAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAGCCCTCCAAAACAAAGCTACCCTCAATATCAAAATCCTTCGCACCGAACCCTCCAAAT
CAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACTCTCCAAATCAAAGCTACCCTCAATATCAAAATCCTTCGCAGCCGAACCCTCCAAATTTCAATTATCAGCA
ACAAAGAGGCCCTAACCAGTGGAACAATCAAAATCAAGGACACCAACAATTTGAAAGGCCGGAACATCGGAACCCACAAGCAGAGGATTCTAACCAGTTGA

Protein sequence

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MACLMAVRRARNPIFVSSFFKVRYPLSFRFTFTCGNQTETLIKTLSTSAIPNDFSNFPSPPQQRSSSSPPYRQPQWGSPSQVNPTSENLNYQSFSEFQNRDNAQQGSQHQ
SPQPNPGFSGQGQSHTQVGNPNSWKPPHQSYPQYQNPSQPNPPKQSYPQYQNPSQPSPPKQSYPQYQNPSHRTLQIKATLNIKILRSRTLQIKATLNIKILRSRTLQISI
ISNKEALTSGTIKIKDTNNLKGRNIGTHKQRILTS

PI0018176 (gene) of Melon (PI 482460) v1 genome