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PI0018214 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018214
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr04:28644057..28644590
RNA-Seq ExpressionPI0018214
SyntenyPI0018214
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0000166 - nucleotide binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031954.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]4.2e-2849.4Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M GRR NNP A + R QEEAE+I  L PKTSTVRLL V+E LGDLH KF+RL+E+ +LLN+R +    PPRIEA   N    D+  G+ ARGN RN++NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRPDY--AQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNNRRREYHDYKMK
        +   R R DY   Q F+E  QE QE WQEIQ+D+ +SS++Q  +     N+RT   +R+  +     K
Subjt:  RGFHRRRPDY--AQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNNRRREYHDYKMK

KAA0057344.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]1.6e-2748.02Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M  RRG  P AG++R QEE E I TLSP+TSTVRLL V++FLGDLH KF+R+M++L+ L QR +    P RIEAN   +       G+ A+ N  NM NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRP-DYAQRF-DEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP
        R    RRP +   R+ D+   E  +AWQ  QE DS S D++GNIW+ N +++      G   RR  +HDYKMK+DLP
Subjt:  RGFHRRRP-DYAQRF-DEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP

TYK11204.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2748.02Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M GRR   P  G++R QEE EE   LSP+TSTV  L VE+ LGDLH KFDR+M++L+ L +R +      RIEAN  N+       G+ AR N RN+ NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRP--DYAQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP
        R   R+RP  +  +  D    E+ EAWQ  QE DS SSD+QGNIWN N +++      G   +R  +HDYKMKIDLP
Subjt:  RGFHRRRP--DYAQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]2.8e-5670.62Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M GRR NNP  GE+RVQE AEEIT LSPKTSTVRLL VEE LGDLHNKFDRLMES++LLN+REE P  PPR E NF N+ RF E RG+ ARG  RNMNN 
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRPDYA--QRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNN-----RRREYHDYKMKIDLP
        RG  RRRP YA  Q+ DE +QEDQEAWQE QEDDS S D+QGN+WNFN+  R G NN     RR EYHDYKMKIDLP
Subjt:  RGFHRRRPDYA--QRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNN-----RRREYHDYKMKIDLP

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]1.7e-5368.36Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M GRR NNP  GE+RVQE  EEIT LSPKTSTVRLL VEE LGDLHNKFD+LMES++LLN+R E P  PPR E NF N+ RF E RG+ ARG  RNMNN 
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRPDYA--QRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNN-----RRREYHDYKMKIDLP
        RG  RRRP YA  Q+ DE  QEDQE WQE QEDDS S D+QGN+WNFN+  R G NN     RR EYHDYKMKIDLP
Subjt:  RGFHRRRPDYA--QRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNN-----RRREYHDYKMKIDLP

TrEMBL top hitse value%identityAlignment
A0A5A7SLA2 Zf-CCHC domain-containing protein2.1e-2849.4Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M GRR NNP A + R QEEAE+I  L PKTSTVRLL V+E LGDLH KF+RL+E+ +LLN+R +    PPRIEA   N    D+  G+ ARGN RN++NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRPDY--AQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNNRRREYHDYKMK
        +   R R DY   Q F+E  QE QE WQEIQ+D+ +SS++Q  +     N+RT   +R+  +     K
Subjt:  RGFHRRRPDY--AQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNNRRREYHDYKMK

A0A5A7UQ86 RNA-directed DNA polymerase-like protein7.8e-2848.02Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M  RRG  P AG++R QEE E I TLSP+TSTVRLL V++FLGDLH KF+R+M++L+ L QR +    P RIEAN   +       G+ A+ N  NM NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRP-DYAQRF-DEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP
        R    RRP +   R+ D+   E  +AWQ  QE DS S D++GNIW+ N +++      G   RR  +HDYKMK+DLP
Subjt:  RGFHRRRP-DYAQRF-DEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP

A0A5D3CJ99 Reverse transcriptase1.0e-2748.02Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M GRR   P  G++R QEE EE   LSP+TSTV  L VE+ LGDLH KFDR+M++L+ L +R +      RIEAN  N+       G+ AR N RN+ NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRP--DYAQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP
        R   R+RP  +  +  D    E+ EAWQ  QE DS SSD+QGNIWN N +++      G   +R  +HDYKMKIDLP
Subjt:  RGFHRRRP--DYAQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP

A0A5D3CLX2 DExH-box ATP-dependent RNA helicase DExH73.7e-2251.68Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVR-GQGARGNGRNMNN
        MV RRG  P  G++R QEE EEITTLSP+TSTV LL VE+ LGDLH KFDR+M+SL+ L +R +      RIEA    N R D  R G+ AR N RN+ +
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVR-GQGARGNGRNMNN

Query:  QRGFHRRR-PDYAQRF-DEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFN
        QR   RRR  D + R+ ++  +E+ EAWQ++Q+ DS   D+Q NIWN N
Subjt:  QRGFHRRR-PDYAQRF-DEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFN

A0A5D3DKV9 Reverse transcriptase6.2e-2545.14Show/hide
Query:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ
        M G+RG  P A ++R Q+EAEEIT LSP+TSTV LL VE+ LGDLH+KFD++M+SL+ LNQR +    P RIEAN  N+       G+ AR N RN+ NQ
Subjt:  MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQ

Query:  RGFHRRRPDYAQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP
        +    RRP                      ++    D+QGNIWN N + +      G   RR  +HDYKMKIDLP
Subjt:  RGFHRRRPDYAQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLR-----TGGNNRRREYHDYKMKIDLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGCCGAAGAGGCAACAATCCTGTTGCGGGGGAACATCGTGTGCAAGAAGAGGCAGAGGAAATCACCACCCTCTCTCCAAAGACATCAACAGTTCGCTTGCTGAC
TGTTGAGGAATTCTTGGGAGATCTCCATAACAAATTCGACAGACTAATGGAAAGTCTCGACCTGCTGAACCAAAGGGAAGAAAATCCACACACACCACCACGAATCGAAG
CCAACTTCCCAAACAACCACCGTTTCGATGAAGTAAGAGGCCAGGGAGCAAGGGGAAATGGTAGAAACATGAACAACCAACGAGGATTTCATAGGAGGAGGCCCGATTAC
GCCCAACGGTTTGATGAGGTTTATCAAGAAGATCAAGAAGCATGGCAAGAAATCCAAGAAGATGACTCCTTAAGCAGTGACGACCAAGGAAACATTTGGAACTTTAATAA
TAACTTGCGAACGGGAGGAAACAACAGAAGAAGAGAGTACCATGACTACAAGATGAAGATTGACCTTCCACATATGATAGCAAGCGAAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGCCGAAGAGGCAACAATCCTGTTGCGGGGGAACATCGTGTGCAAGAAGAGGCAGAGGAAATCACCACCCTCTCTCCAAAGACATCAACAGTTCGCTTGCTGAC
TGTTGAGGAATTCTTGGGAGATCTCCATAACAAATTCGACAGACTAATGGAAAGTCTCGACCTGCTGAACCAAAGGGAAGAAAATCCACACACACCACCACGAATCGAAG
CCAACTTCCCAAACAACCACCGTTTCGATGAAGTAAGAGGCCAGGGAGCAAGGGGAAATGGTAGAAACATGAACAACCAACGAGGATTTCATAGGAGGAGGCCCGATTAC
GCCCAACGGTTTGATGAGGTTTATCAAGAAGATCAAGAAGCATGGCAAGAAATCCAAGAAGATGACTCCTTAAGCAGTGACGACCAAGGAAACATTTGGAACTTTAATAA
TAACTTGCGAACGGGAGGAAACAACAGAAGAAGAGAGTACCATGACTACAAGATGAAGATTGACCTTCCACATATGATAGCAAGCGAAACATAG
Protein sequenceShow/hide protein sequence
MVGRRGNNPVAGEHRVQEEAEEITTLSPKTSTVRLLTVEEFLGDLHNKFDRLMESLDLLNQREENPHTPPRIEANFPNNHRFDEVRGQGARGNGRNMNNQRGFHRRRPDY
AQRFDEVYQEDQEAWQEIQEDDSLSSDDQGNIWNFNNNLRTGGNNRRREYHDYKMKIDLPHMIASET